Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 0.0e+00 1099.7 541 100.0
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.5e-258 896.0 544 80.7
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.7e-252 875.2 541 79.5
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.9e-202 709.5 559 62.3
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.6e-199 699.1 545 62.6
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.3e-198 696.8 542 62.5
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 1.2e-196 690.3 550 62.7
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 1.3e-195 686.8 593 59.7
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 3.0e-195 685.6 557 61.2
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 3.9e-195 685.3 588 59.5
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 1.9e-194 682.9 535 61.3
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 3.3e-194 682.2 551 62.6
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 5.6e-194 681.4 541 62.7
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.1e-192 677.2 582 59.8
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.4e-192 676.8 553 61.5
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.8e-192 676.4 477 67.1
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.8e-192 676.4 554 61.2
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.8e-192 676.4 544 61.6
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 5.3e-192 674.9 539 60.9
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 6.9e-192 674.5 549 60.1
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.0e-192 674.1 553 61.3
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 9.0e-192 674.1 542 62.5
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.6e-191 672.5 543 59.5
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.4e-191 672.2 553 61.1
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.0e-190 670.6 552 60.5
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 2.2e-190 669.5 561 60.2
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 2.2e-190 669.5 548 60.8
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.5e-189 666.0 493 65.9
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 5.5e-189 664.8 549 59.9
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.7e-188 662.5 539 60.1
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.9e-188 661.0 548 60.2
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.3e-187 660.2 568 57.7
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 3.0e-187 659.1 569 58.7
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 8.7e-187 657.5 562 58.0
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 8.7e-187 657.5 553 58.2
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 1.5e-186 656.8 544 59.7
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.5e-186 656.0 560 59.1
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 3.3e-186 655.6 539 60.5
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 4.3e-186 655.2 542 59.4
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.7e-186 654.8 548 59.5
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 1.3e-185 653.7 552 58.7
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 2.1e-185 652.9 547 58.0
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 3.7e-185 652.1 536 60.3
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 8.2e-185 651.0 477 65.8
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 2.4e-184 649.4 463 65.9
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 2.4e-184 649.4 552 58.0
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 4.1e-184 648.7 547 58.0
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 6.9e-184 647.9 546 58.8
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 9.0e-184 647.5 550 57.3
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.6e-183 646.0 571 58.0
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 3.4e-183 645.6 547 57.8
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 4.5e-183 645.2 566 57.6
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 4.5e-183 645.2 570 58.2
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 4.5e-183 645.2 540 59.1
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 5.9e-183 644.8 539 59.7
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.7e-182 643.3 551 58.4
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.7e-182 643.3 554 57.4
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.7e-182 643.3 539 59.4
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 8.5e-182 641.0 540 58.1
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.2e-181 637.9 490 65.1
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 7.2e-181 637.9 542 59.6
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 9.3e-181 637.5 576 54.7
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.6e-180 636.7 566 55.8
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.6e-180 636.7 555 58.6
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.7e-180 636.0 575 56.3
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 3.9e-179 632.1 559 57.8
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 5.1e-179 631.7 512 59.6
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 8.7e-179 630.9 553 55.7
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.9e-178 629.8 554 55.2
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.9e-178 629.8 613 53.8
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 5.7e-178 628.2 531 59.1
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.4e-176 623.6 586 53.1
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.8e-176 623.2 550 56.7
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.8e-176 623.2 552 56.0
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 6.9e-176 621.3 550 55.8
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 3.4e-175 619.0 550 55.8
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 5.0e-174 615.1 560 55.2
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 8.5e-174 614.4 492 61.4
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 4.2e-173 612.1 541 57.3
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 5.5e-173 611.7 454 63.7
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 6.1e-172 608.2 486 58.6
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.8e-171 606.7 501 60.9
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 8.8e-171 604.4 528 57.2
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 3.8e-166 589.0 610 52.1
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 8.5e-166 587.8 471 60.1
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 8.5e-166 587.8 533 56.7
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.9e-165 586.6 541 55.5
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 3.2e-165 585.9 580 51.2
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 9.7e-162 574.3 489 57.3
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.1e-160 570.9 547 52.8
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.7e-151 539.7 553 51.5
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 6.5e-150 535.0 430 61.6
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 2.5e-149 533.1 394 66.0
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 2.5e-149 533.1 572 49.8
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.2e-149 531.6 449 62.4
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 1.9e-141 506.9 387 60.2
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 2.1e-140 503.4 369 65.6
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.7e-137 493.8 443 56.4
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 6.3e-137 491.9 382 60.7
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 7.0e-136 488.4 602 45.8
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 4.3e-133 479.2 542 50.0
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 8.0e-132 474.9 347 65.4
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 6.8e-131 471.9 348 64.4
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 7.5e-130 468.4 442 50.5
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.3e-126 456.8 346 63.3
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 7.0e-120 435.3 347 63.1
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.2e-114 417.9 492 44.9
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.6e-114 416.8 443 50.8
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 4.4e-114 416.0 545 45.9
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 8.3e-113 411.8 474 47.9
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 5.6e-109 399.1 323 61.3
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.8e-108 396.7 326 59.5
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.2e-106 391.3 301 62.1
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.5e-106 391.0 301 61.5
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.2e-105 387.1 498 41.6
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.9e-104 384.0 367 53.7
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 8.7e-102 375.2 321 58.3
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 1.1e-91 341.7 305 57.4
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.3e-86 324.7 253 61.3
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 2.0e-82 310.8 244 64.3
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.1e-80 302.4 255 59.2
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 3.9e-78 296.6 476 35.1
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.9e-78 296.6 215 65.1
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.6e-74 283.9 206 64.1
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.4e-64 251.5 255 51.4
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 7.7e-58 229.2 146 71.2
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.2e-56 223.4 155 64.5
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.6e-53 214.2 220 49.1
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.5e-50 203.4 161 60.9
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.5e-48 196.4 137 67.2
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 5.3e-35 153.3 268 34.3
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 2.2e-33 147.9 204 44.6
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 8.5e-33 146.0 176 51.7
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 4.2e-32 143.7 155 56.1
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 5.5e-32 143.3 155 50.3
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 6.1e-31 139.8 161 52.2
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 4.0e-30 137.1 119 54.6
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.4e-27 128.6 142 50.0
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.1e-27 127.5 149 43.0
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 8.0e-23 112.8 129 48.8
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 8.0e-23 112.8 89 60.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 5.7e-21 106.7 82 62.2
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 5.6e-08 63.5 107 43.9
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.1e-07 61.6 71 42.3


User provided reference genes

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