Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.3e-46 186.8 90 100.0
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 7.3e-38 160.2 93 80.6
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 4.4e-35 151.0 90 75.6
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-31 139.8 92 71.7
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.9e-25 119.0 104 56.7
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 3.5e-24 114.8 92 58.7
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.3e-23 112.8 100 54.0
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 3.0e-23 111.7 95 57.9
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.9e-23 111.3 96 55.2
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.9e-23 111.3 96 56.2
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 5.1e-23 110.9 96 57.3
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 1.9e-22 109.0 90 56.7
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.9e-22 109.0 97 52.6
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 2.5e-22 108.6 93 55.9
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 3.3e-22 108.2 89 60.7
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.2e-21 106.3 90 55.6
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.6e-21 105.9 90 54.4
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.6e-21 105.9 90 56.7
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.6e-21 105.9 97 50.5
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 1.6e-21 105.9 97 50.5
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 6.2e-21 104.0 93 55.9
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 6.2e-21 104.0 92 58.7
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.1e-21 103.6 91 53.8
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.4e-20 102.8 90 55.6
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.4e-20 102.8 90 55.6
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 1.4e-20 102.8 95 50.5
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.8e-20 102.4 87 54.0
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.1e-20 101.7 85 62.4
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 4.0e-20 101.3 91 60.4
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 4.0e-20 101.3 91 59.3
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 5.2e-20 100.9 90 54.4
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 8.9e-20 100.1 87 56.3
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 2.6e-19 98.6 91 50.5
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 3.4e-19 98.2 98 51.0
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 3.4e-19 98.2 91 52.7
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.4e-19 97.8 100 47.0
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 9.9e-19 96.7 87 50.6
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 1.3e-18 96.3 90 51.1
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 1.7e-18 95.9 87 54.0
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.2e-18 95.5 94 48.9
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 2.9e-18 95.1 90 50.0
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.9e-18 95.1 90 52.2
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 2.9e-18 95.1 87 54.0
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.8e-18 94.7 101 47.5
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.1e-17 93.2 95 48.4
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.4e-17 92.8 90 52.2
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 1.9e-17 92.4 91 50.5
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.4e-17 92.0 87 58.6
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 2.4e-17 92.0 91 54.9
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 3.2e-17 91.7 82 51.2
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 4.2e-17 91.3 93 49.5
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.4e-17 90.9 101 44.6
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 5.4e-17 90.9 87 49.4
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 5.4e-17 90.9 93 47.3
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 5.4e-17 90.9 93 49.5
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 7.1e-17 90.5 90 48.9
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 1.2e-16 89.7 87 51.7
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.2e-16 89.7 87 50.6
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-16 89.4 103 42.7
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-16 89.4 104 42.3
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 2.1e-16 89.0 90 50.0
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 4.6e-16 87.8 91 46.2
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.0e-15 86.7 82 52.4
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 2.3e-15 85.5 82 51.2
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 2.3e-15 85.5 87 46.0
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.9e-15 84.7 86 54.7
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 3.9e-15 84.7 90 45.6
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 3.9e-15 84.7 86 48.8
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.1e-14 83.2 97 51.5
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 1.1e-14 83.2 88 48.9
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 3.3e-14 81.6 88 46.6
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 4.3e-14 81.3 88 45.5
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 1.2e-13 79.7 74 52.7
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 6.2e-13 77.4 90 51.1
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 8.1e-13 77.0 90 46.7
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 8.1e-13 77.0 90 46.7
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 8.1e-13 77.0 90 46.7
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.8e-12 75.9 93 46.2
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 2.4e-12 75.5 88 44.3
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 3.1e-12 75.1 91 42.9
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 6.9e-12 73.9 93 47.3
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.5e-11 72.8 89 42.7
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 2.0e-11 72.4 88 43.2
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 2.6e-11 72.0 86 44.2
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 4.4e-11 71.2 90 47.8
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 5.8e-11 70.9 88 43.2
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 5.8e-11 70.9 89 41.6
ECA246G1803 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.6e-11 70.5 91 44.0
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.6e-11 70.5 89 41.6
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.7e-10 69.3 88 42.0
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 8.4e-10 67.0 89 44.9
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 8.4e-10 67.0 90 41.1
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.9e-09 65.9 90 37.8
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 2.4e-09 65.5 90 43.3
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 2.4e-09 65.5 90 43.3
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 2.4e-09 65.5 81 38.3
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.2e-09 65.1 85 40.0
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 4.2e-09 64.7 89 43.8
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 5.4e-09 64.3 87 39.1
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 9.3e-09 63.5 91 39.6
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 9.3e-09 63.5 93 38.7
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 1.6e-08 62.8 89 42.7
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 2.7e-08 62.0 87 43.7
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 3.5e-08 61.6 89 41.6
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 3.5e-08 61.6 89 41.6
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 3.5e-08 61.6 89 41.6
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 3.5e-08 61.6 92 38.0
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 4.6e-08 61.2 91 39.6
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 6.0e-08 60.8 90 40.0
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 7.8e-08 60.5 89 40.4
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.0e-07 60.1 79 38.0
Sc06g0009320 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.0e-07 58.5 82 42.7
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 3.9e-07 58.2 91 36.3
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 3.9e-07 58.2 89 36.0
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 5.1e-07 57.8 89 39.3
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 5.1e-07 57.8 89 39.3
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 5.1e-07 57.8 90 35.6
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 6.6e-07 57.4 91 37.4
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 8.7e-07 57.0 92 33.7
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.1e-06 56.6 91 36.3
Nitab4.5_0011184g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.1e-06 56.6 88 36.4
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.5e-06 56.2 88 36.4
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.9e-06 55.8 92 39.1
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.9e-06 55.8 92 39.1
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.9e-06 55.8 87 35.6
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 2.5e-06 55.5 89 37.1
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 2.5e-06 55.5 89 37.1
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 2.5e-06 55.5 89 37.1
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 2.5e-06 55.5 89 37.1
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 2.5e-06 55.5 89 37.1
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.3e-06 53.9 87 35.6
Sc21g0002520 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.3e-06 53.9 87 35.6
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 9.6e-06 53.5 90 34.4
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 9.6e-06 53.5 90 38.9


User provided reference genes

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