Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.4e-201 705.3 362 100.0
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.9e-186 655.2 363 91.7
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 2.7e-184 648.7 363 91.5
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 6.9e-180 634.0 366 89.1
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 7.7e-155 550.8 339 81.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.9e-154 548.9 332 81.9
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 9.4e-153 543.9 351 78.3
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 9.4e-153 543.9 350 79.4
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 2.7e-152 542.3 355 78.6
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 3.6e-152 542.0 356 77.2
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 3.3e-150 535.4 348 78.2
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.7e-149 533.1 353 77.3
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 2.2e-149 532.7 353 76.5
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-148 530.0 338 79.0
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-148 530.0 338 79.0
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.1e-148 528.9 376 73.1
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.6e-147 526.6 330 80.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.6e-147 526.6 355 75.8
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 3.8e-146 521.9 355 74.6
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.0e-146 521.5 353 72.0
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.0e-146 521.5 353 72.0
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.5e-145 520.0 318 82.4
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.9e-145 519.6 358 74.6
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.5e-145 519.2 350 74.3
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 3.2e-145 518.8 331 77.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 4.2e-145 518.5 322 80.7
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-145 518.1 348 75.0
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 7.2e-145 517.7 343 76.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 7.2e-145 517.7 348 74.4
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 9.4e-145 517.3 355 76.1
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 9.4e-145 517.3 349 73.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.2e-144 516.9 354 72.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 2.7e-144 515.8 324 80.6
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.7e-144 515.8 325 80.0
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.7e-144 515.8 321 81.3
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.7e-144 515.8 335 77.9
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.0e-143 513.8 326 78.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.0e-143 513.8 332 76.8
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.0e-143 513.8 366 74.0
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.3e-143 512.7 338 75.4
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.3e-143 512.7 326 79.8
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 8.8e-143 510.8 345 76.2
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.5e-142 510.0 350 74.6
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.0e-142 509.6 347 74.1
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 3.4e-142 508.8 346 74.9
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 4.4e-142 508.4 346 74.0
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 5.7e-142 508.1 361 72.0
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 9.8e-142 507.3 349 73.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.8e-141 505.8 337 74.8
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-141 505.8 319 78.4
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.7e-141 505.4 354 72.3
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 3.7e-141 505.4 347 73.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 6.3e-141 504.6 353 73.9
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.4e-140 503.4 319 78.7
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.4e-140 502.7 328 76.2
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 7.0e-140 501.1 327 74.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 9.1e-140 500.7 374 69.3
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.6e-139 500.0 309 80.3
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.0e-139 499.6 369 70.2
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 3.5e-139 498.8 348 72.4
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 7.7e-139 497.7 345 72.8
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.3e-138 496.9 320 77.5
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.2e-138 496.1 337 71.2
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.9e-138 495.7 345 72.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 3.8e-138 495.4 355 71.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 5.0e-138 495.0 346 74.0
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 5.0e-138 495.0 329 76.3
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 8.5e-138 494.2 348 74.7
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-137 493.8 346 74.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.1e-137 493.8 346 74.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.1e-137 493.8 346 74.0
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.5e-137 493.4 346 73.7
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.9e-137 493.0 346 73.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 3.2e-137 492.3 342 73.7
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 9.5e-137 490.7 317 75.7
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.2e-136 490.3 337 76.9
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.1e-136 489.6 349 71.9
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.1e-136 489.6 349 71.9
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.1e-136 489.6 349 71.9
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.1e-136 489.6 363 70.5
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.8e-136 489.2 355 72.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 3.6e-136 488.8 309 78.6
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.6e-136 488.8 336 75.6
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 4.7e-136 488.4 341 71.0
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 4.7e-136 488.4 353 72.2
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 4.7e-136 488.4 327 73.1
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 8.0e-136 487.6 357 71.7
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.0e-135 487.3 343 72.9
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.4e-135 486.9 357 71.1
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.3e-135 486.1 322 77.0
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 4.0e-135 485.3 365 68.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.7e-133 479.9 327 76.1
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 2.2e-133 479.6 296 78.0
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.9e-133 478.4 355 69.3
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.2e-131 473.8 290 80.3
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.9e-131 471.5 355 68.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 6.6e-130 468.0 321 75.1
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.4e-127 460.3 367 68.4
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.2e-127 458.4 355 67.9
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.2e-126 457.2 373 66.5
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.5e-126 456.8 305 73.8
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.4e-126 455.7 311 73.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.4e-126 455.3 343 69.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 4.4e-126 455.3 324 71.3
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 4.4e-126 455.3 299 73.6
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-125 453.0 338 69.2
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.2e-125 453.0 381 63.5
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 2.4e-124 449.5 302 77.8
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 7.8e-123 444.5 408 60.3
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 8.6e-122 441.0 313 71.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.5e-121 439.5 346 64.2
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.5e-121 439.5 319 68.3
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 5.8e-118 428.3 351 61.5
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 7.5e-118 427.9 274 78.1
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 4.9e-117 425.2 293 73.0
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.9e-116 423.3 354 61.3
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.3e-114 416.4 355 63.7
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.3e-113 412.1 294 69.0
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.1e-111 407.5 348 64.7
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.4e-111 407.1 313 69.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.2e-109 399.8 235 85.5
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.6e-107 393.7 362 59.1
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-106 390.2 341 61.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-106 390.2 341 61.6
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 6.6e-106 388.3 246 78.0
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.8e-104 382.9 321 63.9
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.8e-103 380.2 294 66.7
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 4.0e-103 379.0 305 65.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.7e-101 373.6 343 57.4
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.3e-97 358.2 241 72.6
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.1e-89 334.3 240 75.0
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.1e-89 334.3 219 75.8
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 9.6e-89 331.3 218 70.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.7e-85 320.5 360 51.9
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.9e-85 319.7 220 71.8
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.7e-80 302.8 182 87.9
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.4e-70 269.6 197 69.0
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.7e-69 267.3 262 59.2
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.9e-61 240.0 161 72.0
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.5e-57 227.6 167 72.5
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.2e-44 183.3 129 72.1
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.7e-43 180.3 129 71.3
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.4e-41 172.2 120 73.3
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.2e-38 164.9 113 69.9
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 8.0e-35 152.1 131 66.4
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.0e-31 139.0 89 75.3
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.2e-30 138.3 118 69.5
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-30 136.3 117 65.0
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.5e-28 131.3 99 67.7
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.7e-24 117.9 253 30.4
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-24 116.7 140 47.9
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.5e-22 110.2 86 61.6
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.9e-22 109.4 88 64.8
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.4e-18 98.2 79 69.6
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.0e-17 94.4 101 53.5
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.0e-15 85.9 56 64.3
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-14 84.7 73 52.1
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 4.5e-14 83.2 43 81.4
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-12 78.6 73 58.9


User provided reference genes

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