Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 2126.3 1111 100.0
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1941.4 1131 88.8
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1874.0 1124 86.0
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1835.1 1123 84.9
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1748.8 1131 79.1
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1723.8 1123 78.3
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1720.3 1125 77.4
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1713.0 1140 77.2
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1710.3 1130 77.1
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1708.7 1128 76.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1706.0 1126 77.7
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1702.6 1125 76.4
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1696.8 1129 76.3
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1695.2 1135 75.9
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1694.1 1118 75.7
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1692.9 1137 76.3
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1692.2 1136 76.3
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1691.8 1118 75.6
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1689.9 1138 76.2
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1688.3 1128 76.5
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1684.8 1126 76.3
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1684.1 1134 76.0
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1684.1 1121 76.0
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1671.4 1132 75.2
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1664.0 1127 74.5
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1663.3 1133 75.6
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1660.2 1138 74.8
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1659.0 1127 74.1
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1657.9 1131 74.4
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1657.5 1123 74.2
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1657.1 1135 74.1
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1656.3 1123 74.0
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1654.8 1124 74.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1654.8 1135 74.9
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1651.0 1123 73.9
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1650.2 1123 73.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1649.0 1129 74.0
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1648.3 1124 73.8
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1642.5 1125 75.2
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1642.1 1125 75.2
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1640.9 1117 74.8
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1640.6 1130 73.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1639.8 1128 74.6
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1634.8 1120 74.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1632.8 1176 71.7
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1630.9 1131 74.1
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1629.8 1130 74.0
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1134 74.3
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1619.4 1134 73.1
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1610.1 1132 72.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1607.4 1125 72.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1594.7 1124 72.4
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1586.6 1102 73.8
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1585.9 1136 71.0
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1122 71.0
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1122 71.7
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1562.4 1124 70.6
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1561.6 1120 70.9
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1555.8 1122 71.1
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1551.2 1120 70.5
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1550.0 1066 73.7
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1548.5 1139 69.6
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1543.1 1129 70.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1542.7 1126 69.3
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1539.2 1025 76.1
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1534.6 1129 69.8
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1534.2 1124 68.7
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1533.1 1126 70.2
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1532.7 1124 69.0
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1531.2 1119 70.1
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1529.2 1136 68.3
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1528.1 1066 72.4
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1525.0 1124 68.2
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1524.6 1121 68.3
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1524.6 1124 67.8
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1521.5 1143 68.9
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1521.5 1143 68.9
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1516.5 1124 68.1
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1513.0 1122 68.4
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1507.3 1010 76.9
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1506.5 1128 67.9
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1505.0 1116 69.3
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1504.6 1128 67.7
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1503.8 1128 68.0
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1502.6 1128 67.6
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1499.6 1093 70.8
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1493.0 1120 66.7
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1484.9 1116 66.8
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1484.5 1116 66.8
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1479.9 1115 66.5
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1478.4 1066 70.5
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1475.7 1115 66.4
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1473.0 1032 72.3
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1471.4 1066 71.4
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1450.6 921 79.4
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1421.0 1067 68.2
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1415.2 922 79.2
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1394.0 1124 65.3
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1368.2 1142 62.8
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1363.2 1089 65.2
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1343.6 1114 62.9
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1320.1 893 74.1
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1313.9 1064 61.8
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1305.0 1109 58.8
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1269.2 883 72.7
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1189.1 822 74.5
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1122.5 782 73.8
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1107.4 916 63.1
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1089.7 1072 52.4
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 2.1e-304 1049.3 1071 49.3
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 4.3e-297 1025.0 669 77.6
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 9.5e-289 997.3 756 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.8e-285 985.3 1070 47.5
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.6e-283 978.4 1068 48.5
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 7.1e-252 874.8 600 73.5
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.5e-236 823.2 919 51.7
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 4.4e-209 732.6 1085 40.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.2e-203 714.5 611 59.9
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.9e-157 560.1 422 69.0
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 3.9e-157 560.1 377 73.5
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 6.7e-141 506.1 437 63.6
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.2e-118 432.2 352 62.8
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.0e-101 375.9 314 62.1
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.2e-95 354.4 1197 27.7
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 7.7e-89 333.2 313 59.4
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 6.1e-86 323.6 362 50.0
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.5e-84 318.9 1154 26.1
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.4e-84 317.8 333 58.0
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 4.6e-65 254.2 333 45.3
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 2.1e-62 245.4 322 46.9
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.3e-38 166.4 149 65.1
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 4.2e-34 151.4 111 73.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.1e-31 143.3 641 23.1
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.3e-30 139.8 107 75.7
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 9.3e-26 123.6 86 75.6
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 7.9e-25 120.6 86 74.4
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 5.1e-24 117.9 70 75.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-23 115.9 68 76.5
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 5.7e-07 61.2 45 75.6


User provided reference genes

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