Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 7.5e-254 880.2 493 100.0
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.9e-116 423.7 507 55.0
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 4.5e-97 359.4 505 49.7
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.1e-78 297.4 596 40.4
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.4e-74 283.9 574 39.0
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 4.5e-73 279.6 556 40.6
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.2e-70 271.6 645 37.4
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 5.3e-66 256.1 515 39.6
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.5e-63 248.1 620 35.6
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.9e-63 247.7 511 38.9
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.7e-62 243.8 694 34.4
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 6.8e-61 239.2 647 34.0
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 6.8e-61 239.2 524 39.1
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.4e-60 236.5 522 39.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 2.8e-59 233.8 611 34.7
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.2e-57 228.4 688 32.8
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 5.9e-57 226.1 570 34.7
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 7.7e-57 225.7 566 34.6
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.5e-55 221.5 544 38.1
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 3.2e-55 220.3 542 37.3
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 4.2e-55 219.9 532 39.1
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.2e-55 219.2 704 32.7
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.6e-54 218.0 532 39.1
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 2.3e-53 214.2 540 37.4
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.2e-53 213.0 736 31.8
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.4e-52 210.3 667 32.1
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.4e-52 210.3 667 32.1
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.7e-51 208.0 629 33.1
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.2e-49 201.8 654 34.6
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.6e-49 201.4 651 33.6
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.6e-49 201.4 582 33.5
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.3e-48 197.6 646 31.4
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.6e-48 196.1 677 31.8
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.5e-47 194.9 663 33.3
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.5e-47 194.1 167 64.7
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 9.5e-47 192.2 489 35.0
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.0e-45 188.7 167 65.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.4e-45 188.3 692 31.5
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.8e-45 188.0 539 34.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.8e-45 188.0 497 34.4
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.2e-45 186.4 164 65.9
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.2e-44 185.3 659 31.9
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.5e-44 184.9 490 33.9
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 2.0e-44 184.5 705 31.1
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 9.8e-44 182.2 651 33.0
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.3e-43 181.8 528 32.4
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.3e-43 181.8 666 33.3
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.7e-43 181.4 523 34.0
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 8.3e-43 179.1 190 57.4
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.7e-41 174.1 657 32.6
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.5e-41 173.7 168 64.3
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 4.5e-41 173.3 483 37.7
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 5.9e-41 172.9 697 30.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 7.8e-41 172.6 430 36.3
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 7.8e-41 172.6 606 32.8
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.0e-40 172.2 499 34.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.5e-39 168.3 177 58.8
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 1.9e-39 167.9 564 34.2
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 4.3e-39 166.8 535 31.0
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.3e-39 166.8 650 31.2
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.8e-37 161.4 153 62.1
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 2.3e-37 161.0 170 60.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 2.3e-37 161.0 599 31.6
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 4.0e-37 160.2 681 30.5
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.5e-36 158.3 170 62.9
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 2.6e-36 157.5 586 32.3
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 5.8e-36 156.4 176 60.2
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 7.5e-36 156.0 167 61.7
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 9.8e-36 155.6 167 55.7
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.3e-35 155.2 697 30.7
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.3e-35 155.2 539 29.7
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.2e-35 154.5 159 59.7
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 6.4e-35 152.9 565 30.3
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.2e-34 150.6 604 31.0
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 9.2e-34 149.1 577 30.8
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.2e-33 148.7 164 58.5
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.6e-33 148.3 168 53.0
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.0e-33 147.9 480 33.8
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 2.7e-33 147.5 135 63.7
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 3.5e-33 147.1 646 31.1
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 4.6e-33 146.7 512 32.4
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.0e-32 145.6 167 58.1
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 6.6e-32 142.9 208 46.6
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 8.6e-32 142.5 143 58.0
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.9e-31 141.4 565 31.5
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 4.3e-31 140.2 607 29.3
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.8e-30 137.5 603 29.5
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 3.6e-30 137.1 603 29.5
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 6.2e-30 136.3 160 52.5
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 6.2e-30 136.3 106 69.8
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 8.0e-30 136.0 641 29.2
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 1.1e-29 135.6 633 29.1
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.1e-29 135.6 392 32.1
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.5e-28 131.7 645 29.3
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.2e-27 127.9 170 47.6
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.1e-26 125.6 162 53.1
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.4e-26 124.4 208 42.8
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 3.2e-26 124.0 696 28.2
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 5.4e-26 123.2 192 47.4
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 9.2e-26 122.5 652 27.1
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 2.1e-25 121.3 103 64.1
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 2.1e-25 121.3 553 30.2
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-25 120.6 136 56.6
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 3.5e-25 120.6 575 30.1
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.0e-25 119.8 198 46.0
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 6.0e-25 119.8 200 41.5
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.0e-24 119.0 96 64.6
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-24 118.6 143 53.8
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.3e-24 118.6 576 30.0
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 2.3e-24 117.9 576 30.2
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 3.9e-24 117.1 482 29.3
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 3.9e-24 117.1 140 50.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.9e-23 114.8 186 46.8
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.3e-23 114.0 698 27.5
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 5.6e-23 113.2 545 29.5
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 5.6e-23 113.2 382 33.5
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 9.5e-23 112.5 198 44.4
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.4e-21 108.6 71 78.9
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.4e-21 108.6 470 31.7
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.8e-21 108.2 520 28.5
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.3e-21 107.8 85 65.9
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.0e-21 107.1 85 64.7
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.2e-20 105.5 85 63.5
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.6e-20 104.4 191 42.4
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.4e-20 103.6 618 27.3
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 9.9e-20 102.4 572 26.4
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.9e-19 100.9 163 47.2
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.7e-19 100.5 617 28.4
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.4e-18 98.6 217 35.5
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 7.1e-18 96.3 542 29.0
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.2e-17 95.5 559 28.3
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.1e-17 94.7 286 35.0
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 3.5e-17 94.0 207 39.1
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 6.0e-17 93.2 178 42.1
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 6.0e-17 93.2 178 42.1
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.3e-16 92.0 469 29.4
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.3e-16 92.0 487 28.1
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 1.5e-15 88.6 408 29.4
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.9e-15 88.2 105 47.6
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 3.3e-15 87.4 449 26.7
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 7.3e-15 86.3 178 40.4
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 7.3e-15 86.3 178 40.4
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.1e-13 82.4 635 24.9


User provided reference genes

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