Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 4.7e-263 910.6 444 100.0
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.0e-221 772.3 442 84.6
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.5e-216 756.1 438 84.5
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.3e-209 733.0 434 80.2
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 6.9e-206 720.7 436 77.8
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.4e-205 718.4 439 76.3
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 9.9e-205 716.8 444 75.9
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 2.9e-204 715.3 454 76.0
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 4.2e-203 711.4 440 75.5
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 9.3e-203 710.3 440 75.9
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 7.9e-202 707.2 435 78.2
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 3.9e-201 704.9 469 72.7
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.5e-200 703.0 443 73.4
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.3e-200 701.8 441 77.3
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 9.6e-200 700.3 440 74.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 9.6e-200 700.3 445 74.6
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.1e-198 696.8 442 74.0
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 1.4e-198 696.4 440 73.6
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.8e-198 696.0 436 74.3
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 2.4e-198 695.7 437 73.7
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 2.4e-198 695.7 438 73.5
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 2.4e-198 695.7 440 74.8
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 6.9e-198 694.1 440 74.3
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 9.0e-198 693.7 440 73.0
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 4.5e-197 691.4 443 73.6
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 5.8e-197 691.0 446 75.3
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 7.6e-197 690.6 443 73.1
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.0e-196 690.3 440 73.2
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.0e-196 690.3 439 74.3
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 8.4e-196 687.2 436 73.4
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.1e-195 686.8 436 73.6
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 3.5e-194 681.8 440 71.8
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 3.9e-193 678.3 440 72.5
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 8.7e-193 677.2 440 71.1
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.1e-192 676.8 438 72.1
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 4.3e-192 674.9 440 72.7
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 4.3e-192 674.9 440 71.1
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 5.7e-192 674.5 441 71.2
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 3.7e-191 671.8 438 71.5
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 6.3e-191 671.0 440 71.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.8e-190 669.5 440 70.7
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 6.9e-190 667.5 443 72.2
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 9.0e-190 667.2 461 71.6
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 1.5e-189 666.4 440 72.3
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.4e-189 665.2 443 72.5
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.4e-189 665.2 436 74.1
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.7e-189 664.1 440 70.9
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 7.7e-189 664.1 440 70.9
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 3.8e-188 661.8 440 70.2
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 5.0e-188 661.4 438 70.1
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 8.5e-188 660.6 441 70.3
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.4e-187 659.8 435 72.4
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.4e-187 659.8 436 72.2
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.1e-186 656.0 435 72.0
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.4e-185 653.3 442 71.5
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 2.3e-185 652.5 440 71.1
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 4.3e-184 648.3 443 69.8
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 8.2e-183 644.0 441 68.7
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.4e-182 643.3 461 66.2
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.6e-181 639.0 435 70.8
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.0e-180 637.1 405 73.8
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 1.4e-179 633.3 437 68.4
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.0e-177 627.1 438 68.5
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 2.3e-177 625.9 446 66.4
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.6e-176 622.5 442 68.8
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.6e-176 622.5 439 67.4
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.3e-175 620.2 437 67.3
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 5.3e-174 614.8 422 71.3
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.0e-172 610.5 416 70.9
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 5.2e-169 598.2 361 75.9
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 2.2e-164 582.8 435 65.5
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-162 577.0 352 75.6
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.2e-162 577.0 466 63.1
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.7e-162 575.9 352 75.6
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 4.7e-162 575.1 416 67.3
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.4e-161 573.5 344 76.5
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 2.2e-159 566.2 651 48.2
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.8e-158 563.1 406 65.8
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 7.0e-158 561.2 442 63.8
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 2.7e-157 559.3 446 62.8
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 2.7e-157 559.3 383 70.5
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 5.2e-153 545.0 353 74.8
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 8.3e-151 537.7 440 59.5
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 4.1e-150 535.4 354 72.6
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 8.0e-146 521.2 429 59.4
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 3.5e-141 505.8 439 59.9
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.1e-137 492.7 439 57.4
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 6.4e-135 485.0 439 55.4
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 6.0e-133 478.4 391 61.9
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.7e-132 476.9 440 55.7
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 2.5e-131 473.0 500 52.0
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.1e-129 467.6 426 57.0
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.8e-129 466.8 343 68.5
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 6.8e-129 464.9 440 53.9
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.0e-128 463.4 375 60.3
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 2.7e-125 453.0 280 76.8
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 3.5e-125 452.6 284 76.4
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 7.8e-125 451.4 429 54.8
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 3.6e-122 442.6 377 59.9
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 2.6e-120 436.4 280 73.9
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 2.3e-116 423.3 280 71.1
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 3.3e-115 419.5 280 70.4
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 7.3e-115 418.3 449 51.4
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.2e-112 411.0 440 50.7
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 7.6e-112 408.3 453 46.4
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.5e-107 393.3 281 67.3
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.7e-103 380.6 282 63.5
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 8.4e-103 378.3 436 48.6
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 4.2e-102 375.9 440 49.1
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 5.4e-102 375.6 213 83.1
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 1.2e-101 374.4 213 82.6
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.2e-101 374.4 426 50.5
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.6e-96 356.7 440 45.5
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.1e-86 324.7 339 47.8
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 6.0e-85 318.9 420 44.0
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.1e-68 262.7 152 79.6
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.5e-67 260.4 172 70.9
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.5e-67 260.4 172 70.9
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.2e-66 255.4 163 72.4
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 5.1e-60 236.1 187 63.1
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 6.3e-58 229.2 152 69.7
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 3.1e-49 200.3 126 73.8
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 2.0e-48 197.6 130 67.7
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 2.2e-47 194.1 127 69.3
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.5e-46 190.7 130 67.7
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 1.2e-45 188.3 306 35.9
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 7.5e-43 179.1 131 66.4
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-42 177.9 95 86.3
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 4.1e-41 173.3 123 64.2
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.1e-37 161.0 176 51.7
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.5e-32 143.3 104 67.3
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.9e-30 137.9 112 60.7
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 8.0e-29 132.5 105 63.8
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 5.4e-25 119.8 83 66.3
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.7e-23 114.8 108 53.7
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.3e-15 88.6 45 86.7
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 1.7e-15 88.2 77 58.4
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 4.7e-13 80.1 48 68.8
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.2e-13 79.7 68 58.8
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 1.8e-12 78.2 63 60.3
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.3e-12 77.8 64 62.5
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 9.8e-11 72.4 31 93.5


User provided reference genes

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