Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.8e-187 658.3 400 100.0
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 6.0e-84 315.5 401 54.1
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.8e-73 280.0 412 49.0
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 2.0e-47 194.1 442 34.8
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.0e-47 194.1 467 33.0
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 4.7e-44 183.0 435 36.8
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.0e-43 181.8 456 32.0
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.4e-43 181.4 467 35.3
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 2.3e-43 180.6 452 33.4
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.2e-43 179.5 454 33.5
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 6.7e-43 179.1 461 34.9
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 2.0e-42 177.6 456 31.6
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 5.7e-42 176.0 452 35.6
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 7.4e-42 175.6 448 32.8
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.2e-41 174.1 458 32.1
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 2.8e-41 173.7 456 34.0
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 6.3e-41 172.6 454 32.6
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-40 171.4 454 33.9
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 5.3e-40 169.5 440 33.9
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.6e-39 167.9 460 33.7
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.0e-39 167.5 452 33.4
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.6e-39 167.2 465 31.0
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 3.5e-39 166.8 448 32.6
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 5.9e-39 166.0 457 33.3
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 7.7e-39 165.6 413 32.7
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.0e-38 165.2 441 33.6
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.0e-38 165.2 458 31.4
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.5e-37 161.4 454 34.1
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.2e-37 160.2 470 31.3
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 2.7e-36 157.1 456 33.6
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 4.7e-36 156.4 478 33.7
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.7e-36 156.4 452 32.7
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 6.1e-36 156.0 463 32.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.0e-35 155.2 405 31.9
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.0e-35 153.7 452 35.2
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 5.2e-35 152.9 446 33.0
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 5.2e-35 152.9 468 32.9
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 6.7e-35 152.5 406 32.0
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.5e-34 151.4 466 34.1
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.0e-34 151.0 459 30.7
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.3e-34 150.2 475 33.3
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.7e-33 147.9 405 31.1
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 3.7e-33 146.7 448 32.1
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-32 144.8 383 31.9
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.8e-32 144.4 456 30.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 1.8e-32 144.4 461 30.2
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 2.4e-32 144.1 464 30.0
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 3.1e-32 143.7 448 30.6
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 9.1e-32 142.1 417 30.9
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-31 141.7 277 38.3
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.6e-31 141.4 463 30.9
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 2.0e-31 141.0 468 32.3
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 2.7e-31 140.6 408 31.1
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.3e-30 138.3 462 29.0
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.7e-30 137.9 462 29.0
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.7e-30 137.9 475 30.7
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 3.8e-30 136.7 445 32.4
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 8.5e-30 135.6 462 38.3
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.1e-29 135.2 463 28.9
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.1e-29 135.2 454 29.7
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 2.5e-29 134.0 287 35.9
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.5e-29 134.0 432 30.3
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 3.2e-29 133.7 450 31.3
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 5.5e-29 132.9 453 29.8
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 7.2e-29 132.5 448 29.9
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-28 131.7 275 34.2
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.6e-28 131.3 450 30.0
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.6e-28 131.3 469 32.4
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 3.6e-28 130.2 448 28.8
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 6.1e-28 129.4 451 29.9
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.0e-27 128.6 458 28.8
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.4e-27 128.3 284 34.5
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 4.0e-27 126.7 471 28.9
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 8.8e-27 125.6 465 27.7
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.2e-26 125.2 470 28.5
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.6e-26 124.0 478 31.4
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 2.6e-26 124.0 491 29.7
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 3.4e-26 123.6 430 34.0
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 5.7e-26 122.9 456 28.5
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 7.5e-26 122.5 264 37.5
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 7.5e-26 122.5 283 35.0
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 9.8e-26 122.1 456 30.5
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.3e-25 121.7 404 29.2
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.7e-25 121.3 461 30.8
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.2e-25 120.9 472 29.4
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.8e-25 120.6 418 28.5
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.1e-24 118.6 296 31.1
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.1e-24 118.6 460 29.8
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.4e-24 118.2 455 30.5
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.8e-24 117.9 466 28.5
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 4.1e-24 116.7 477 31.0
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 9.1e-24 115.5 458 27.3
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.9e-22 110.5 465 27.5
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 5.0e-22 109.8 446 27.4
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 8.5e-22 109.0 461 28.0
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.1e-21 108.6 460 26.5
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.1e-21 108.6 457 27.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.1e-21 108.6 457 30.2
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.2e-21 107.1 457 29.5
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 5.5e-21 106.3 425 27.8
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 1.2e-20 105.1 233 36.9
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.6e-20 103.6 460 27.2
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 6.1e-20 102.8 451 27.3
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.0e-20 102.4 453 28.7
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 8.0e-20 102.4 456 26.1
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 3.0e-19 100.5 470 27.7
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 3.0e-19 100.5 493 26.8
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.2e-19 99.8 455 28.1
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 6.8e-19 99.4 468 26.7
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 8.8e-19 99.0 277 31.4
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 8.8e-19 99.0 455 27.7
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.2e-18 98.6 426 27.7
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.5e-18 98.2 463 26.3
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.0e-18 97.8 460 27.0
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 5.7e-18 96.3 442 27.1
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 5.7e-18 96.3 475 27.8
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.3e-17 95.1 471 25.9
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.7e-17 94.7 442 27.1
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 2.2e-17 94.4 469 27.5
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.8e-17 94.0 291 30.6
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.8e-17 94.0 472 26.1
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.7e-17 93.6 466 27.5
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 4.9e-17 93.2 447 27.7
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 1.1e-16 92.0 461 30.2
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.1e-16 92.0 455 27.5
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.2e-15 88.6 434 28.1
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.7e-15 87.4 440 24.5
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 5.0e-14 83.2 200 29.5
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.6e-14 82.8 403 26.6
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.5e-13 81.6 456 24.8
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.9e-13 81.3 383 26.4
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 4.3e-13 80.1 460 26.3
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 4.3e-13 80.1 285 27.7
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 5.6e-13 79.7 471 26.1
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 9.5e-13 79.0 277 28.2
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.2e-12 78.6 456 27.2
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.2e-12 78.6 244 27.0
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.8e-12 77.4 469 26.4
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 6.1e-12 76.3 448 25.7
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 8.0e-12 75.9 287 29.3
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.4e-11 75.1 234 30.8
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.3e-11 74.3 446 24.9
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 3.0e-11 73.9 276 27.9
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 4.0e-11 73.6 454 27.5
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.2e-10 72.0 265 28.7
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.2e-10 72.0 454 26.0
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-10 71.2 238 28.2
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.0e-10 71.2 426 26.3
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 2.0e-10 71.2 120 35.0
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 3.4e-10 70.5 446 24.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 7.5e-10 69.3 455 27.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 9.8e-10 68.9 232 28.0
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.3e-09 68.6 467 24.8
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-08 65.1 196 29.1
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 9.2e-08 62.4 160 33.1
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.6e-07 61.6 174 29.3
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.6e-07 61.6 384 24.2
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-07 61.2 94 41.5
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 2.7e-07 60.8 94 41.5
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 7.8e-07 59.3 94 40.4
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 7.8e-07 59.3 436 24.3
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.3e-06 58.5 95 42.1
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.3e-06 57.8 435 25.5
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.9e-06 57.0 437 25.2
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 6.6e-06 56.2 122 32.8
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 8.6e-06 55.8 439 23.2
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 8.6e-06 55.8 85 37.6


User provided reference genes

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