Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 5.8e-167 590.9 312 100.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 2.5e-122 442.6 312 73.7
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 7.5e-90 334.7 273 63.7
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.3e-89 331.3 273 62.3
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.7e-87 326.2 273 61.2
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 2.2e-86 323.2 311 54.7
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.6e-84 317.0 274 60.6
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 3.6e-84 315.8 270 61.5
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 4.7e-84 315.5 276 58.7
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 1.4e-83 313.9 279 59.1
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.8e-83 313.5 273 60.8
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 8.8e-83 311.2 264 61.7
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.2e-82 310.8 273 60.1
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.4e-82 308.9 276 59.1
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 9.8e-82 307.8 275 58.2
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 4.9e-81 305.4 310 54.5
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.4e-80 303.9 278 58.3
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.8e-80 303.5 278 58.3
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 3.1e-80 302.8 274 58.8
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 5.4e-80 302.0 273 58.6
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 7.0e-80 301.6 275 54.9
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.0e-79 300.1 308 54.2
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 2.7e-79 299.7 270 59.3
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 5.9e-79 298.5 274 59.5
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 3.8e-78 295.8 256 61.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 6.6e-78 295.0 273 54.6
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 1.9e-77 293.5 269 59.5
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 3.3e-77 292.7 294 54.8
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 3.3e-77 292.7 275 56.7
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 9.5e-77 291.2 274 55.5
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 3.0e-75 286.2 274 54.4
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 3.0e-75 286.2 275 55.3
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 4.0e-75 285.8 273 57.9
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 8.9e-75 284.6 259 57.9
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 2.0e-74 283.5 272 54.8
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 7.5e-74 281.6 274 53.6
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 9.8e-74 281.2 294 54.1
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.7e-73 280.4 306 52.3
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 2.2e-73 280.0 275 54.9
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 4.9e-73 278.9 306 52.3
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.8e-72 276.9 277 53.4
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 3.2e-72 276.2 271 55.7
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 4.1e-72 275.8 272 55.1
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 4.1e-72 275.8 277 53.1
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 4.1e-72 275.8 274 53.6
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.0e-72 275.0 275 54.2
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.2e-71 274.2 276 52.5
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.6e-71 273.9 276 52.9
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 7.8e-71 271.6 275 54.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 7.8e-71 271.6 271 53.9
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.3e-70 270.8 341 49.0
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.3e-70 270.0 270 51.1
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.3e-70 270.0 273 51.6
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.9e-70 269.2 275 52.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 5.0e-70 268.9 274 53.3
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 5.0e-70 268.9 244 59.0
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 5.0e-70 268.9 273 53.1
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 6.6e-70 268.5 311 47.9
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 6.6e-70 268.5 273 53.5
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.1e-69 267.7 274 52.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.5e-69 267.3 247 57.1
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.9e-69 266.9 278 52.9
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.9e-69 266.9 275 52.7
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 2.1e-68 263.5 274 52.9
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 6.2e-68 261.9 313 47.9
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.0e-67 261.2 273 53.8
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 3.1e-67 259.6 270 51.5
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 4.0e-67 259.2 297 48.8
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.5e-66 257.3 274 52.2
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 2.6e-66 256.5 274 52.2
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 2.6e-66 256.5 274 52.2
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 3.4e-66 256.1 222 60.8
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 2.2e-65 253.4 277 49.8
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 2.9e-65 253.1 277 50.2
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.9e-65 252.3 274 51.5
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 7.0e-64 248.4 277 50.2
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.7e-63 246.5 246 55.7
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.8e-63 245.0 275 50.9
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.3e-62 244.2 260 51.2
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.7e-62 243.8 269 50.6
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 5.0e-62 242.3 264 50.4
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.6e-61 238.8 228 57.0
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.8e-60 236.5 313 44.7
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 3.6e-60 236.1 252 52.4
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 4.7e-60 235.7 275 48.4
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 6.2e-60 235.3 244 53.3
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.8e-59 233.8 320 44.7
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 3.1e-59 233.0 270 45.9
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 6.8e-59 231.9 275 48.7
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 2.0e-58 230.3 275 48.4
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.0e-58 230.3 265 50.2
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 9.8e-58 228.0 268 48.9
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 2.2e-57 226.9 225 53.3
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 4.6e-55 219.2 306 43.8
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 4.6e-55 219.2 271 44.3
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 3.0e-54 216.5 310 40.0
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.1e-53 214.5 256 46.5
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.2e-52 211.1 259 45.6
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 4.7e-52 209.1 258 44.6
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 4.0e-51 206.1 283 42.8
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 6.8e-51 205.3 304 44.1
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.3e-49 201.1 170 61.2
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 1.1e-45 188.0 200 51.5
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 2.4e-43 180.3 244 43.4
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 2.2e-41 173.7 209 47.4
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.2e-39 167.9 185 53.0
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.9e-37 160.6 224 42.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.3e-33 147.9 274 36.9
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.1e-32 144.8 184 45.7
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 8.1e-28 128.6 145 46.2
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 6.9e-27 125.6 255 32.2
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 4.5e-26 122.9 138 50.7
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.6e-26 122.1 119 56.3
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-22 110.9 141 48.2
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 5.1e-22 109.4 78 67.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.3e-21 106.3 130 50.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 9.0e-19 98.6 163 39.9
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.0e-18 97.4 57 80.7
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 3.4e-18 96.7 163 39.3
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 5.8e-18 95.9 232 32.3
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 7.6e-18 95.5 163 39.3
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 7.6e-18 95.5 167 37.1
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.5e-17 92.4 58 77.6
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-16 91.3 127 44.9
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-16 91.3 127 44.9
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 5.7e-13 79.3 132 39.4
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.3e-12 78.2 77 51.9
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 6.3e-12 75.9 179 33.0
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.1e-11 73.6 63 63.5
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.1e-11 73.6 63 63.5
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 6.9e-11 72.4 173 33.5
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 1.2e-10 71.6 59 52.5
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 5.9e-10 69.3 68 52.9
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 5.9e-10 69.3 68 52.9
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.7e-09 67.8 66 59.1
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 6.5e-09 65.9 182 29.1
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.9e-08 64.3 149 38.3
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-07 61.2 66 51.5
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 1.8e-06 57.8 89 39.3
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.7e-06 55.8 131 38.2


User provided reference genes

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