Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3486 Erigeron canadensis HOM05D003814 ORTHO05D004399 5.5e-189 664.1 321 100.0
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 5.7e-69 265.4 323 47.4
Lsat_1_v5_gn_1_71940 Lactuca sativa HOM05D003814 ORTHO05D004399 4.0e-62 242.7 320 45.6
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 3.5e-58 229.6 323 45.2
HanXRQChr04g0126191 Helianthus annuus HOM05D003814 ORTHO05D004399 4.5e-58 229.2 323 43.7
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 2.5e-56 223.4 322 41.9
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 1.8e-54 217.2 327 42.2
HanXRQChr04g0110661 Helianthus annuus HOM05D003814 ORTHO05D004399 6.6e-49 198.7 293 43.0
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 3.6e-47 193.0 310 39.7
ECA236G4104 Erigeron canadensis HOM05D003814 ORTHO05D004399 1.7e-33 147.5 282 39.7
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 8.6e-33 145.2 324 34.0
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 1.9e-32 144.1 321 32.1
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 1.9e-32 144.1 325 31.4
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 2.1e-31 140.6 309 30.7
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 3.6e-31 139.8 323 33.7
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 1.1e-30 138.3 319 32.3
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 1.1e-30 138.3 332 31.6
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.8e-30 137.5 325 30.5
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 5.2e-30 136.0 332 33.1
ECA236G4439 Erigeron canadensis HOM05D003814 ORTHO05D004399 3.4e-29 133.3 302 35.1
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.8e-29 132.5 328 29.9
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 5.8e-29 132.5 330 30.3
Sabra16G0039400 Salix brachista HOM05D003814 ORTHO05D004399 9.9e-29 131.7 281 32.4
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 8.4e-28 128.6 328 29.3
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 1.1e-27 128.3 332 29.5
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.1e-27 128.3 332 29.5
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 5.4e-27 125.9 324 32.1
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 1.2e-26 124.8 317 30.6
Cc08_g07160 Coffea canephora HOM05D003814 ORTHO05D004399 2.1e-26 124.0 328 29.6
Gohir.D04G023700 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.7e-25 120.9 346 30.3
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 3.0e-25 120.2 326 28.5
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 6.6e-25 119.0 332 30.4
MELO3C009576.2 Cucumis melo HOM05D003814 ORTHO05D004399 1.1e-24 118.2 344 31.7
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.5e-24 117.9 315 28.9
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.9e-24 117.5 349 28.4
ClCG10G017770 Citrullus lanatus HOM05D003814 ORTHO05D004399 2.5e-24 117.1 284 34.5
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 2.5e-24 117.1 327 29.7
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 4.3e-24 116.3 286 31.8
PGSC0003DMG400046351 Solanum tuberosum HOM05D003814 ORTHO05D004399 4.3e-24 116.3 288 31.2
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 5.6e-24 115.9 329 31.3
Gorai.012G033100 Gossypium raimondii HOM05D003814 ORTHO05D004399 7.3e-24 115.5 346 29.2
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 7.3e-24 115.5 319 29.8
Gohir.D04G029200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.3e-23 114.8 343 29.2
CsaV3_3G038340 Cucumis sativus L. HOM05D003814 ORTHO05D004399 1.6e-23 114.4 346 30.1
Nitab4.5_0000343g0080 Nicotiana tabacum HOM05D003814 ORTHO05D004399 2.1e-23 114.0 273 29.7
Peaxi162Scf00047g10141 Petunia axillaris HOM05D003814 ORTHO05D004399 2.1e-23 114.0 274 31.0
Gohir.A05G386550 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.8e-23 113.6 345 28.4
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 3.6e-23 113.2 328 28.0
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 6.2e-23 112.5 325 30.5
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 6.2e-23 112.5 349 27.8
Prupe.7G202900 Prunus persica HOM05D003814 ORTHO05D004399 6.2e-23 112.5 284 31.7
Lsat_1_v5_gn_8_83741 Lactuca sativa HOM05D003814 ORTHO05D004399 1.1e-22 111.7 229 33.2
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.4e-22 111.3 315 27.9
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.4e-22 111.3 281 30.2
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 1.8e-22 110.9 313 30.7
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 1.8e-22 110.9 328 28.7
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 4.0e-22 109.8 316 30.4
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 4.0e-22 109.8 315 27.6
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 6.9e-22 109.0 329 27.1
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 6.9e-22 109.0 329 27.1
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 1.5e-21 107.8 264 34.1
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 2.0e-21 107.5 264 30.3
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.0e-21 107.5 281 29.5
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 3.4e-21 106.7 340 27.9
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 3.4e-21 106.7 308 30.8
Gohir.A02G162300 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.4e-21 106.3 354 29.4
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 4.4e-21 106.3 293 30.0
PSO478G4598 Papaver somniferum HOM05D003814 ORTHO05D004399 5.8e-21 105.9 277 30.3
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 5.8e-21 105.9 331 28.4
Lsat_1_v5_gn_8_99821 Lactuca sativa HOM05D002339 ORTHO05D004399 7.6e-21 105.5 228 32.9
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 1.3e-20 104.8 343 29.7
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.3e-20 104.8 244 31.6
Lsat_1_v5_gn_2_42360 Lactuca sativa HOM05D003814 ORTHO05D004399 1.3e-20 104.8 209 31.6
PSO017G6459 Papaver somniferum HOM05D003814 ORTHO05D004399 1.3e-20 104.8 268 30.6
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 2.2e-20 104.0 340 29.7
CAN.G625.43 Capsicum annuum HOM05D003814 ORTHO05D004399 2.2e-20 104.0 280 29.3
Gohir.D03G018133 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.9e-20 103.6 347 28.2
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 4.9e-20 102.8 340 29.7
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 4.9e-20 102.8 340 29.7
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 4.9e-20 102.8 323 25.7
Gorai.003G018500 Gossypium raimondii HOM05D003814 ORTHO05D004399 8.4e-20 102.1 347 28.0
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 1.1e-19 101.7 285 27.7
Peaxi162Scf00067g00233 Petunia axillaris HOM05D003814 ORTHO05D004399 1.4e-19 101.3 244 29.9
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 1.9e-19 100.9 339 29.5
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 2.4e-19 100.5 332 28.0
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 2.4e-19 100.5 275 28.7
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 4.2e-19 99.8 275 29.5
Gohir.D04G024036 Gossypium hirsutum HOM05D003814 ORTHO05D004399 5.4e-19 99.4 280 28.9
Migut.E01439 Erythranthe guttata HOM05D003814 ORTHO05D004399 1.2e-18 98.2 354 26.0
SHI03045 Sapria himalayana HOM05D003814 ORTHO05D004399 1.6e-18 97.8 325 28.9
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.1e-18 97.4 319 27.6
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.1e-18 97.4 306 27.5
PSO170G5919 Papaver somniferum HOM05D003814 ORTHO05D004399 6.0e-18 95.9 324 26.5
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 6.0e-18 95.9 319 27.0
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 1.7e-17 94.4 253 30.8
PGSC0003DMG400037022 Solanum tuberosum HOM05D003814 ORTHO05D004399 3.0e-17 93.6 271 29.2
PGR004G1882 Punica granatum HOM05D003814 ORTHO05D004399 6.6e-17 92.4 335 25.7
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 2.5e-16 90.5 296 31.4
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 3.3e-16 90.1 240 30.0
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 1.3e-15 88.2 284 26.4
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.3e-15 88.2 252 27.4
TAR636G1700 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.6e-15 87.8 224 29.9
Lsat_1_v5_gn_7_15380 Lactuca sativa HOM05D003814 ORTHO05D004399 4.8e-15 86.3 161 36.6
SGA_v2.0_scaffold4G02155 Striga asiatica HOM05D003814 ORTHO05D004399 1.1e-14 85.1 332 26.2
Zm00001eb202740 Zea mays HOM05D003814 ORTHO05D004399 1.1e-14 85.1 332 26.8
FvH4_1g08161 Fragaria vesca HOM05D003814 ORTHO05D004399 1.4e-14 84.7 250 28.8
Lsat_1_v5_gn_4_158900 Lactuca sativa HOM05D003814 ORTHO05D004399 1.8e-14 84.3 156 34.0
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 3.1e-14 83.6 264 29.5
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.2e-13 81.6 329 27.1
SHI03051 Sapria himalayana HOM05D003814 ORTHO05D004399 1.2e-13 81.6 305 28.2
PSO832G2394 Papaver somniferum HOM05D003814 ORTHO05D004399 2.0e-13 80.9 190 26.3
Lsat_1_v5_gn_5_64781 Lactuca sativa HOM05D003814 ORTHO05D004399 2.6e-13 80.5 146 38.4
Migut.E01447 Erythranthe guttata HOM05D003814 ORTHO05D004399 5.8e-13 79.3 225 28.4
PSO801G0304 Papaver somniferum HOM05D003814 ORTHO05D004399 5.8e-13 79.3 176 33.5
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 1.3e-12 78.2 275 27.3
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 2.9e-12 77.0 261 26.1
ECA236G1426 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.9e-12 77.0 48 83.3
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.9e-12 77.0 301 23.9
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 4.9e-12 76.3 250 27.6
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 4.9e-12 76.3 191 31.9
Lsat_1_v5_gn_1_81281 Lactuca sativa HOM05D003814 ORTHO05D004399 8.4e-12 75.5 143 33.6
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 1.1e-11 75.1 221 29.9
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 1.4e-11 74.7 247 26.7
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 1.9e-11 74.3 320 24.1
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 2.4e-11 73.9 324 26.2
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 2.4e-11 73.9 329 24.9
PGSC0003DMG400035508 Solanum tuberosum HOM05D003814 ORTHO05D004399 9.3e-11 72.0 137 35.8
FAN26G2210 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.6e-10 71.2 248 27.4
Lsat_1_v5_gn_8_2320 Lactuca sativa HOM05D003814 ORTHO05D004399 2.1e-10 70.9 119 38.7
C02p17570 Brassica napus HOM05D003814 ORTHO05D004399 3.5e-10 70.1 216 25.9
FAN28G0704 Fragaria x ananassa HOM05D003814 ORTHO05D004399 3.5e-10 70.1 197 29.9
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 4.6e-10 69.7 328 24.7
PSO170G6690 Papaver somniferum HOM05D003814 ORTHO05D004399 6.0e-10 69.3 222 27.5
PSO478G3480 Papaver somniferum HOM05D003814 ORTHO05D004399 6.0e-10 69.3 208 26.4
MD15G1214100 Malus domestica HOM05D003814 ORTHO05D004399 1.3e-09 68.2 141 34.8
A02p10510 Brassica napus HOM05D003814 ORTHO05D004399 1.8e-09 67.8 216 25.9
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 5.1e-09 66.2 321 24.9
Haze_11119 Corylus avellana HOM05D003814 ORTHO05D004399 1.9e-08 64.3 155 31.0
FAN23G1165 Fragaria x ananassa HOM05D003814 ORTHO05D004399 4.3e-08 63.2 168 31.0
Lsat_1_v5_gn_5_52401 Lactuca sativa HOM05D001639 ORTHO05D004140 5.6e-08 62.8 112 33.0
Lsat_1_v5_gn_2_46441 Lactuca sativa HOM05D002730 ORTHO05D011082 7.4e-08 62.4 86 38.4
PSO782G3287 Papaver somniferum HOM05D003814 ORTHO05D004399 7.4e-08 62.4 249 26.5
FAN19G3124 Fragaria x ananassa HOM05D003814 ORTHO05D004399 9.6e-08 62.0 223 26.0
CiPaw.04G145600 Carya illinoinensis HOM05D003814 ORTHO05D004399 1.6e-07 61.2 121 33.1
C04p48950 Brassica napus HOM05D003814 ORTHO05D004399 8.1e-07 58.9 220 23.6
BolC4t26476H Brassica oleracea HOM05D003814 ORTHO05D004399 8.1e-07 58.9 220 23.6
Lsat_1_v5_gn_1_107740 Lactuca sativa HOM05D001862 ORTHO05D015698 8.1e-07 58.9 86 37.2
Lsat_1_v5_gn_2_16460 Lactuca sativa HOM05D003814 ORTHO05D004399 1.8e-06 57.8 107 34.6
Haze_27585 Corylus avellana HOM05D003814 ORTHO05D004399 3.1e-06 57.0 183 24.6


User provided reference genes

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