Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.1e-163 577.8 317 100.0
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 2.8e-137 492.3 330 87.6
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.0e-122 443.0 328 82.3
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.0e-122 443.0 328 82.3
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.8e-84 316.2 331 58.9
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 5.1e-78 295.4 329 61.4
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.1e-69 267.7 331 55.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.1e-69 267.7 331 55.3
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 8.7e-62 241.5 375 50.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 4.2e-56 222.6 366 46.4
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 9.4e-56 221.5 337 49.9
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.1e-55 220.3 367 48.5
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 6.7e-54 215.3 368 47.8
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.0e-53 213.8 345 51.6
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.0e-53 213.8 246 56.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.3e-52 211.1 355 50.7
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.2e-52 210.3 395 41.8
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.8e-52 209.9 357 44.8
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 4.8e-52 209.1 368 45.7
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 4.1e-51 206.1 389 44.5
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.9e-50 202.2 341 45.7
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.7e-49 200.7 345 49.6
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.8e-49 199.5 397 46.1
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 8.5e-49 198.4 335 49.3
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 5.5e-48 195.7 383 47.3
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 9.4e-48 194.9 335 49.0
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.7e-47 193.4 394 43.1
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 3.6e-47 193.0 401 46.4
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.0e-46 191.4 327 42.8
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.0e-46 191.4 327 42.8
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.0e-46 191.4 383 40.2
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 3.0e-46 189.9 419 41.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.8e-46 188.3 395 44.6
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 2.6e-45 186.8 354 42.9
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.6e-45 186.8 381 40.4
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.4e-45 186.0 382 40.1
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 5.7e-45 185.7 412 41.0
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 5.7e-45 185.7 397 43.1
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 5.7e-45 185.7 398 38.9
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 7.4e-45 185.3 393 44.0
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 7.4e-45 185.3 397 43.1
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 7.4e-45 185.3 367 43.9
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 9.7e-45 184.9 334 43.1
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.7e-44 184.1 400 39.8
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.7e-44 184.1 400 39.8
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.7e-44 184.1 399 43.1
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.2e-44 183.7 404 45.8
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 6.3e-44 182.2 392 40.6
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.1e-43 181.4 387 45.0
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.4e-43 181.0 392 39.0
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.8e-43 180.6 379 45.9
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 2.4e-43 180.3 322 50.6
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 3.1e-43 179.9 434 36.2
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 4.1e-43 179.5 365 40.8
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.5e-42 176.4 388 44.1
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 3.5e-42 176.4 389 36.8
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.9e-41 173.3 384 44.0
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 8.5e-41 171.8 389 42.7
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.1e-40 171.4 347 40.9
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.5e-40 171.0 384 43.8
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.5e-40 171.0 410 36.8
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.9e-40 170.6 337 47.8
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 5.5e-40 169.1 366 45.6
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 5.5e-40 169.1 367 45.5
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 7.2e-40 168.7 405 39.3
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 9.4e-40 168.3 337 40.1
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 6.1e-39 165.6 400 36.2
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.1e-39 165.6 401 38.9
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 6.1e-39 165.6 371 38.8
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 8.0e-39 165.2 370 44.9
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.0e-38 164.9 373 39.9
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.0e-38 164.9 373 39.9
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.4e-38 164.5 264 54.2
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.0e-38 163.3 264 53.8
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.0e-38 162.9 408 38.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 5.2e-38 162.5 409 38.1
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.2e-38 162.5 409 38.1
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-37 161.4 374 43.6
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 3.3e-37 159.8 284 45.1
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.3e-37 159.8 409 38.1
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.7e-37 158.3 350 37.1
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.7e-37 158.3 350 37.1
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.2e-36 157.1 395 37.5
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.2e-36 157.1 402 37.3
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.7e-36 156.4 350 37.7
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.1e-35 154.8 364 39.0
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.1e-35 152.9 350 36.9
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 7.0e-35 152.1 405 41.0
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.2e-34 151.4 408 34.6
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.7e-34 150.2 253 43.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 3.5e-34 149.8 417 40.0
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 4.5e-34 149.4 399 38.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.7e-33 147.5 396 39.1
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.7e-33 147.5 311 38.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 3.8e-33 146.4 376 42.3
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 6.5e-33 145.6 354 37.3
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.5e-33 145.6 335 38.8
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 6.5e-33 145.6 335 38.8
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 7.2e-32 142.1 260 51.2
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.6e-31 141.0 412 35.0
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.6e-31 139.8 368 42.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 8.0e-31 138.7 233 45.1
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.4e-30 137.9 340 39.1
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.6e-29 133.7 254 46.9
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 3.4e-29 133.3 331 35.6
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.3e-28 131.3 324 35.8
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.1e-27 126.3 263 45.2
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 5.9e-26 122.5 343 41.4
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.5e-24 117.9 359 35.7
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 2.5e-24 117.1 254 47.2
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.6e-23 114.4 255 38.4
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 3.6e-23 113.2 188 46.3
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 6.1e-23 112.5 377 34.7
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.8e-22 110.9 260 42.7
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 6.8e-22 109.0 252 43.7
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 8.8e-22 108.6 252 43.7
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.5e-21 107.8 368 30.4
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 7.5e-21 105.5 264 36.0
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.3e-20 104.8 329 30.4
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.7e-20 104.4 254 35.8
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 2.8e-20 103.6 236 46.6
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 4.9e-20 102.8 245 37.1
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-19 101.7 247 36.8
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-19 101.7 247 36.8
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.1e-19 101.7 247 36.8
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-19 101.3 235 36.6
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-19 100.9 247 36.4
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.8e-19 100.9 313 34.5
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 3.1e-19 100.1 342 32.2
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 9.2e-19 98.6 264 40.9
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 7.8e-18 95.5 259 42.1
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 2.3e-17 94.0 330 30.6
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.3e-17 94.0 252 38.1
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.3e-17 94.0 302 35.4
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 3.8e-17 93.2 245 34.7
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 3.8e-17 93.2 215 35.3
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 3.8e-17 93.2 222 37.4
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 6.6e-17 92.4 101 54.5
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-16 91.7 252 37.7
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.9e-16 90.9 267 31.5
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 6.1e-15 85.9 305 32.1
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.0e-14 85.1 341 30.2
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 2.3e-14 84.0 232 34.1
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.0e-14 83.6 252 39.3
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 8.9e-14 82.0 107 66.4
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-12 78.2 259 32.0
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 4.9e-12 76.3 253 37.9
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.6e-10 71.2 315 27.6
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 2.1e-07 60.8 123 41.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 6.2e-07 59.3 151 31.8
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.3e-06 57.4 315 28.9
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.2e-06 56.2 181 30.9
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 8.9e-06 55.5 294 27.2


User provided reference genes

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