Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 0.0e+00 2036.5 1111 100.0
HanXRQChr17g0541641 Helianthus annuus HOM05D004299 ORTHO05D003557 2.2e-51 208.8 576 33.9
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 9.0e-45 186.8 259 51.4
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 3.2e-42 178.3 586 32.1
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 5.5e-26 124.4 608 27.6
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.2e-25 123.2 209 42.1
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.0e-24 120.2 992 25.1
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.9e-24 118.2 217 41.5
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.5e-23 116.3 431 30.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.5e-23 115.5 215 41.4
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.4e-21 109.0 443 30.0
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.5e-20 106.3 699 26.9
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.0e-20 105.9 204 40.2
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 5.8e-20 104.4 201 41.3
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 7.6e-20 104.0 699 26.2
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.0e-19 103.6 486 28.6
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.8e-19 101.7 364 28.6
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.8e-19 101.7 233 39.1
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 5.0e-19 101.3 112 56.2
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 6.5e-19 100.9 507 28.4
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.5e-18 99.0 233 36.1
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 2.5e-18 99.0 616 25.5
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 9.3e-18 97.1 213 38.0
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 9.3e-18 97.1 519 28.3
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.6e-17 96.3 213 39.0
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 2.1e-17 95.9 214 38.8
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 2.7e-17 95.5 235 37.0
Lsat_1_v5_gn_4_37260 Lactuca sativa HOM05D004299 ORTHO05D003557 4.6e-17 94.7 175 40.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 4.6e-17 94.7 290 33.4
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 6.1e-17 94.4 485 26.2
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 6.1e-17 94.4 410 30.7
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.3e-16 92.4 316 32.6
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 2.3e-16 92.4 228 33.8
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 2.3e-16 92.4 245 35.9
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 3.9e-16 91.7 267 35.6
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 5.1e-16 91.3 207 37.7
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.1e-16 91.3 435 28.7
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 6.7e-16 90.9 264 35.6
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 8.7e-16 90.5 609 23.3
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.1e-15 90.1 322 31.7
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.9e-15 89.4 181 39.2
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.5e-15 89.0 255 33.3
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.5e-15 89.0 274 31.4
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 4.3e-15 88.2 254 35.8
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.3e-15 88.2 540 28.9
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.3e-15 88.2 247 34.4
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.3e-15 88.2 247 34.4
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 5.7e-15 87.8 274 31.8
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.4e-15 87.4 260 35.4
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.7e-15 87.0 424 28.5
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.3e-14 86.7 647 25.5
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-14 86.7 233 36.1
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.6e-14 86.3 336 28.6
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-14 85.9 194 38.1
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.2e-14 85.9 193 36.3
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.8e-14 85.5 203 36.5
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.7e-14 85.1 238 34.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 6.3e-14 84.3 690 24.6
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 6.3e-14 84.3 438 28.8
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.3e-14 84.3 308 33.4
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 8.2e-14 84.0 223 34.1
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.2e-14 84.0 449 28.3
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 8.2e-14 84.0 449 28.1
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.1e-13 83.6 207 38.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-13 83.6 572 26.0
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.1e-13 83.6 248 32.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.8e-13 82.8 438 28.1
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 2.4e-13 82.4 577 26.9
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.1e-13 82.0 448 27.7
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.1e-13 81.6 379 28.8
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 4.1e-13 81.6 278 31.3
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.3e-13 81.3 183 36.1
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 9.0e-13 80.5 453 24.9
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.2e-12 80.1 395 26.6
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.2e-12 80.1 217 34.6
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.5e-12 79.7 255 31.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 2.0e-12 79.3 229 33.6
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.0e-12 79.3 249 29.7
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.4e-12 78.6 493 26.4
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-12 78.2 232 31.9
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-12 78.2 232 31.9
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 4.5e-12 78.2 232 31.9
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 4.5e-12 78.2 253 30.8
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 7.7e-12 77.4 444 25.9
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.0e-11 77.0 118 49.2
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.3e-11 76.6 523 26.4
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.7e-11 76.3 475 25.5
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.7e-11 76.3 232 34.1
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-11 75.9 203 35.5
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 2.9e-11 75.5 467 25.5
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.9e-11 75.5 726 24.2
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.8e-11 75.1 201 32.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 5.0e-11 74.7 184 37.0
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 5.0e-11 74.7 631 26.1
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 5.0e-11 74.7 273 28.9
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 6.5e-11 74.3 284 28.2
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 8.5e-11 73.9 188 33.5
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.5e-10 72.4 164 39.6
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 3.2e-10 72.0 174 37.4
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 3.2e-10 72.0 491 26.7
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 3.2e-10 72.0 174 37.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 3.2e-10 72.0 169 36.1
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.2e-10 70.9 251 29.9
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 7.2e-10 70.9 303 28.7
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 9.4e-10 70.5 528 27.1
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 9.4e-10 70.5 171 35.7
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 9.4e-10 70.5 527 27.3
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 1.2e-09 70.1 108 46.3
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 3.6e-09 68.6 272 29.8
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 6.1e-09 67.8 520 26.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 7.9e-09 67.4 113 45.1
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.0e-08 67.0 241 29.5
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.8e-08 66.2 397 26.7
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 2.3e-08 65.9 576 24.8
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 2.3e-08 65.9 281 32.0
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 5.1e-08 64.7 498 24.1
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 5.1e-08 64.7 498 24.1
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 5.1e-08 64.7 407 24.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 6.7e-08 64.3 138 39.1
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 8.8e-08 63.9 572 25.9
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.1e-07 63.5 39 79.5
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 1.1e-07 63.5 240 32.1
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-07 63.2 605 24.5
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.5e-07 63.2 274 33.6
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.5e-07 63.2 282 33.0
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.5e-07 63.2 668 26.3
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.5e-07 63.2 644 24.7
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 3.3e-07 62.0 138 35.5
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 5.7e-07 61.2 547 24.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 7.4e-07 60.8 297 27.3
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 9.7e-07 60.5 733 24.0
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 2.2e-06 59.3 623 24.6
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 3.7e-06 58.5 166 34.3


User provided reference genes

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