Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.0e-54 216.5 110 100.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.7e-42 175.3 109 81.7
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-40 169.5 109 77.1
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.4e-38 162.9 108 76.9
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.2e-31 139.8 108 65.7
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 4.0e-30 134.8 108 65.7
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 4.0e-30 134.8 108 63.0
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 5.2e-30 134.4 108 63.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 5.2e-30 134.4 108 64.8
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 6.8e-30 134.0 108 61.1
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 6.8e-30 134.0 108 64.8
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 6.8e-30 134.0 108 64.8
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 8.9e-30 133.7 95 69.5
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.2e-29 133.3 108 63.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.2e-29 133.3 108 64.8
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.5e-29 132.9 108 62.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.5e-29 132.9 108 63.9
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.5e-29 132.9 108 63.9
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.5e-29 132.9 108 63.9
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.5e-29 132.9 108 63.9
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.6e-29 132.1 108 62.0
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 2.6e-29 132.1 109 60.6
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 3.4e-29 131.7 108 62.0
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 3.4e-29 131.7 109 67.0
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 3.4e-29 131.7 108 61.1
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 5.8e-29 131.0 108 61.1
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 7.5e-29 130.6 95 68.4
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 7.5e-29 130.6 108 61.1
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 9.9e-29 130.2 94 70.2
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 9.9e-29 130.2 108 62.0
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.3e-28 129.8 108 60.2
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 2.2e-28 129.0 108 60.2
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.2e-28 129.0 108 60.2
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.2e-28 129.0 108 60.2
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.9e-28 128.6 108 60.2
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.9e-28 128.6 95 66.3
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.9e-28 128.6 108 61.1
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.9e-28 128.6 108 63.0
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 3.7e-28 128.3 108 59.3
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.7e-28 128.3 108 60.2
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 4.9e-28 127.9 109 62.4
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 6.4e-28 127.5 95 67.4
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 6.4e-28 127.5 107 62.6
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 6.4e-28 127.5 108 62.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 8.3e-28 127.1 95 66.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 8.3e-28 127.1 108 59.3
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.1e-27 126.7 95 67.4
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.1e-27 126.7 108 58.3
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.1e-27 126.7 108 63.0
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.9e-27 125.9 108 58.3
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.9e-27 125.9 108 56.5
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.9e-27 125.9 95 63.2
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.9e-27 125.9 108 59.3
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.4e-27 125.6 108 61.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 2.4e-27 125.6 108 61.1
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 2.4e-27 125.6 108 60.2
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.2e-27 125.2 108 60.2
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 3.2e-27 125.2 108 61.1
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 5.4e-27 124.4 108 59.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.4e-27 124.4 108 58.3
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 5.4e-27 124.4 108 61.1
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 9.2e-27 123.6 108 58.3
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.2e-26 123.2 94 62.8
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.2e-26 123.2 108 60.2
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.2e-26 123.2 108 56.5
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.2e-26 123.2 108 59.3
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.6e-26 122.9 95 65.3
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.6e-26 122.9 108 56.5
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.6e-26 122.9 95 62.1
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 2.1e-26 122.5 108 57.4
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 2.1e-26 122.5 108 58.3
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 2.1e-26 122.5 109 59.6
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 2.1e-26 122.5 95 61.1
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 2.7e-26 122.1 128 53.9
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.7e-26 122.1 95 61.1
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 3.5e-26 121.7 97 61.9
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 4.6e-26 121.3 107 57.9
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 6.0e-26 120.9 105 56.2
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.0e-26 120.9 95 60.0
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 6.0e-26 120.9 95 61.1
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 7.8e-26 120.6 95 60.0
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 7.8e-26 120.6 95 60.0
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 7.8e-26 120.6 95 60.0
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 7.8e-26 120.6 95 60.0
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 7.8e-26 120.6 108 59.3
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 7.8e-26 120.6 95 61.1
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.0e-25 120.2 95 61.1
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.0e-25 120.2 102 60.8
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-25 119.8 95 61.1
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-25 119.8 95 60.0
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.3e-25 119.8 95 61.1
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.3e-25 119.8 94 60.6
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.7e-25 119.4 95 60.0
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-25 119.4 97 62.9
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 1.7e-25 119.4 97 62.9
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 2.3e-25 119.0 97 59.8
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.0e-25 118.6 95 60.0
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.0e-25 118.6 95 60.0
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.0e-25 118.6 94 60.6
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.9e-25 118.2 95 63.2
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.9e-25 118.2 95 63.2
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.9e-25 118.2 95 63.2
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 5.1e-25 117.9 95 58.9
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 5.1e-25 117.9 95 58.9
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 6.6e-25 117.5 108 57.4
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 6.6e-25 117.5 97 61.9
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 8.6e-25 117.1 100 56.0
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.1e-24 116.7 97 61.9
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.1e-24 116.7 98 62.2
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.5e-24 116.3 87 65.5
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.9e-24 115.9 88 68.2
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.9e-24 115.9 88 68.2
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.9e-24 115.9 95 62.1
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 2.5e-24 115.5 95 57.9
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.5e-24 115.5 88 67.0
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.5e-24 115.5 99 60.6
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 4.3e-24 114.8 97 61.9
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 5.6e-24 114.4 97 60.8
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 5.6e-24 114.4 108 57.4
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 5.6e-24 114.4 99 59.6
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 9.5e-24 113.6 87 64.4
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 9.5e-24 113.6 88 62.5
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.2e-23 113.2 95 57.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.6e-23 112.8 95 53.7
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.1e-23 112.5 105 57.1
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.1e-23 112.5 93 59.1
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.1e-23 112.5 93 59.1
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 4.7e-23 111.3 86 61.6
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.2e-23 110.9 108 52.8
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 8.1e-23 110.5 103 54.4
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.1e-22 110.2 95 55.8
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 5.2e-22 107.8 108 54.6
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 6.8e-22 107.5 95 54.7
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.1e-19 100.1 124 44.4
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.1e-19 100.1 152 40.8
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 9.2e-19 97.1 122 45.1
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.3e-17 92.4 87 54.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 9.6e-16 87.0 96 46.9
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 9.6e-16 87.0 96 50.0
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 3.6e-15 85.1 58 70.7
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 3.6e-15 85.1 88 48.9
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 4.7e-15 84.7 57 71.9
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 4.7e-15 84.7 59 67.8
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 8.1e-15 84.0 81 53.1
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.1e-14 83.6 83 51.8
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.1e-14 83.6 86 53.5
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 3.1e-14 82.0 91 47.3
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 6.9e-14 80.9 58 62.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.2e-13 80.1 58 65.5
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.2e-13 80.1 58 72.4
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.5e-13 79.7 57 66.7
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.0e-13 79.3 58 62.1
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.4e-13 78.6 58 63.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 5.8e-13 77.8 58 65.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.8e-13 77.8 58 65.5
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.7e-12 76.3 86 46.5
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.2e-12 75.9 78 52.6
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 8.4e-12 73.9 107 39.3
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.8e-06 56.2 44 59.1


User provided reference genes

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