Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 6.7e-148 527.3 268 100.0
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 5.8e-115 417.9 271 79.0
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 4.0e-92 342.0 272 70.6
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.1e-78 297.4 267 61.4
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 9.6e-78 294.3 267 58.8
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 3.7e-77 292.4 267 58.8
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 8.1e-77 291.2 267 57.3
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 3.1e-76 289.3 267 58.1
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 9.0e-76 287.7 267 58.1
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 9.9e-75 284.3 268 58.6
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 2.9e-74 282.7 270 58.1
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 1.9e-73 280.0 254 57.1
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 3.2e-73 279.3 252 59.1
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 5.5e-73 278.5 246 60.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 7.1e-73 278.1 269 58.0
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 9.3e-73 277.7 250 59.6
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.6e-72 276.9 247 58.3
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.6e-72 276.9 267 55.8
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 2.7e-72 276.2 267 54.7
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 3.5e-72 275.8 267 56.2
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 6.0e-72 275.0 252 58.3
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.3e-71 273.9 267 58.1
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.8e-71 273.5 267 55.4
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.0e-71 272.7 252 57.5
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.9e-71 272.3 270 54.8
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.9e-71 272.3 271 56.1
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 5.1e-71 271.9 250 58.8
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.1e-71 271.9 270 54.8
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.1e-71 271.9 271 55.7
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 8.7e-71 271.2 270 55.2
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 8.7e-71 271.2 271 55.4
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.1e-70 270.8 274 55.1
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.1e-70 270.8 273 55.3
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.9e-70 270.0 248 58.5
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 5.6e-70 268.5 255 56.5
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 9.6e-70 267.7 248 58.1
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 2.1e-69 266.5 246 56.9
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 4.8e-69 265.4 255 55.7
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 4.8e-69 265.4 255 54.1
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.1e-68 264.2 269 53.2
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.4e-68 263.8 232 59.5
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.4e-68 263.8 232 59.5
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 1.4e-68 263.8 273 54.2
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.1e-68 262.7 248 55.2
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 4.0e-68 262.3 273 53.5
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 6.9e-68 261.5 267 53.2
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 9.0e-68 261.2 259 54.4
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.5e-67 260.4 251 57.8
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 2.0e-67 260.0 266 53.8
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.6e-67 259.6 257 55.3
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.4e-67 259.2 267 53.2
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 4.5e-67 258.8 267 53.2
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 5.8e-67 258.5 257 54.9
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 7.6e-67 258.1 268 53.0
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.0e-66 257.7 260 54.2
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.0e-66 257.7 267 53.6
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.3e-66 257.3 249 55.8
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.3e-66 257.3 249 55.0
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.3e-66 257.3 257 54.9
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 2.9e-66 256.1 249 56.6
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 4.2e-65 252.3 259 52.5
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 4.2e-65 252.3 247 54.3
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 9.3e-65 251.1 258 52.7
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.2e-64 250.8 249 55.8
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.6e-64 250.4 268 50.4
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.6e-64 250.4 256 53.9
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.7e-64 249.6 268 51.5
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.3e-63 247.3 251 54.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.8e-63 246.9 257 52.1
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.8e-63 246.9 257 51.8
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.5e-62 243.8 259 51.0
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.9e-62 243.4 254 51.2
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 2.5e-62 243.0 251 51.0
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 4.3e-62 242.3 267 50.6
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 4.3e-62 242.3 268 50.4
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 7.4e-62 241.5 234 54.7
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 9.7e-62 241.1 251 52.2
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 1.3e-61 240.7 245 53.5
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.6e-61 240.4 248 52.0
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.6e-61 240.4 248 52.0
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 2.2e-61 240.0 250 52.0
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.2e-61 240.0 250 51.2
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 3.7e-61 239.2 273 51.6
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.1e-60 237.7 269 49.4
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.4e-60 237.3 249 50.2
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 1.8e-60 236.9 269 49.1
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.8e-60 236.9 252 52.8
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 2.4e-60 236.5 269 49.1
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 6.9e-60 235.0 250 50.0
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 6.9e-60 235.0 256 50.8
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.5e-59 233.8 261 51.0
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 2.0e-59 233.4 269 48.7
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 2.0e-59 233.4 269 48.7
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 2.6e-59 233.0 250 51.2
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 2.6e-59 233.0 246 53.3
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 3.4e-59 232.6 261 48.3
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 4.5e-59 232.3 267 48.3
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 5.9e-59 231.9 250 49.6
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.7e-58 230.3 235 53.2
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.9e-57 226.9 250 48.4
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 3.2e-57 226.1 262 49.6
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 5.5e-57 225.3 250 48.4
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 5.5e-57 225.3 250 48.8
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 9.4e-57 224.6 250 49.2
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.7e-56 223.0 265 50.2
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.9e-55 219.2 212 56.1
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 6.7e-55 218.4 262 46.2
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.5e-54 217.2 246 52.4
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 2.5e-54 216.5 267 49.8
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.3e-54 216.1 187 58.3
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 4.5e-51 205.7 220 52.3
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.3e-50 204.1 256 46.9
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.8e-50 202.6 231 51.1
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 8.5e-50 201.4 176 58.0
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 9.4e-49 198.0 225 51.1
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.6e-46 189.9 203 50.7
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 4.5e-43 179.1 241 40.7
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 3.2e-41 172.9 229 45.0
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 7.2e-41 171.8 134 63.4
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 8.8e-39 164.9 248 39.5
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.0e-35 153.7 143 60.1
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 3.8e-34 149.4 245 40.8
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 7.2e-33 145.2 221 38.9
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.2e-32 144.4 219 38.8
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.1e-32 143.7 109 60.6
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.6e-32 142.9 170 44.1
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.0e-31 141.4 242 36.8
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.4e-31 141.0 233 42.5
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.4e-30 136.0 213 45.1
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 5.7e-30 135.6 242 36.4
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 5.7e-30 135.6 240 34.2
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.3e-28 129.0 164 43.3
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 5.9e-27 125.6 237 35.0
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.7e-26 124.0 144 46.5
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 2.9e-26 123.2 194 38.1
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 8.8e-23 111.7 160 44.4
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.7e-13 80.9 83 49.4
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.3e-10 71.2 165 30.9
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 3.3e-09 66.6 72 50.0
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 3.3e-09 66.6 72 50.0
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.1e-08 63.9 83 45.8
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 8.0e-08 62.0 81 40.7
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 1.4e-07 61.2 144 31.2


User provided reference genes

Program Settings