Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 0.0e+00 1355.5 695 100.0
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 0.0e+00 1077.8 695 79.4
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 7.8e-289 996.9 695 74.1
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 1.3e-283 979.5 668 74.7
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.4e-250 869.8 715 63.4
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 3.0e-248 862.1 715 63.8
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.3e-246 856.7 703 63.6
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 1.5e-244 849.7 708 62.7
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 1.0e-243 847.0 704 63.8
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 1.6e-241 839.7 710 61.0
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 1.6e-238 829.7 717 59.8
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.5e-236 823.2 714 59.5
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 2.6e-236 822.4 715 60.1
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 1.7e-235 819.7 711 60.5
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 3.8e-235 818.5 717 59.6
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 3.8e-235 818.5 716 58.8
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 3.2e-234 815.5 701 60.2
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 4.2e-234 815.1 716 59.1
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 5.5e-234 814.7 727 59.1
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 4.6e-233 811.6 715 59.4
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 7.9e-233 810.8 710 59.9
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 3.9e-232 808.5 716 59.6
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 8.8e-232 807.4 692 61.0
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 9.7e-231 803.9 712 59.3
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 1.8e-229 799.7 700 61.7
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 3.1e-229 798.9 701 59.3
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 4.1e-229 798.5 703 60.7
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 5.3e-229 798.1 711 59.9
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.5e-228 796.6 715 58.9
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 2.6e-228 795.8 738 57.3
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 3.4e-228 795.4 610 67.0
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 5.9e-228 794.7 711 59.6
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 3.8e-227 792.0 709 59.2
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 2.5e-226 789.3 696 60.2
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 7.2e-226 787.7 676 62.4
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 9.4e-226 787.3 715 57.6
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 1.4e-224 783.5 702 58.8
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 8.8e-224 780.8 708 57.3
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 1.1e-223 780.4 715 58.3
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 1.5e-223 780.0 706 58.5
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 2.6e-223 779.2 707 57.4
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.7e-222 776.5 740 56.5
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.8e-222 775.8 652 62.3
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 4.8e-222 775.0 708 57.6
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 8.2e-222 774.2 697 57.4
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.1e-221 773.9 740 55.9
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 1.4e-221 773.5 715 56.9
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.8e-221 773.1 755 55.1
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 1.8e-221 773.1 712 57.6
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 1.8e-221 773.1 713 58.3
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 4.1e-221 771.9 715 56.4
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 4.1e-221 771.9 704 57.2
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 4.1e-221 771.9 700 57.7
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.6e-220 769.2 747 55.4
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 4.5e-220 768.5 715 55.9
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.0e-219 767.3 691 59.3
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 1.3e-219 766.9 713 56.1
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 5.0e-219 765.0 719 57.3
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 1.5e-218 763.5 698 58.6
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 1.9e-218 763.1 702 58.8
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 1.9e-218 763.1 708 57.3
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 5.5e-218 761.5 722 54.4
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 7.2e-218 761.1 697 58.4
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 1.2e-217 760.4 700 58.9
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.6e-217 760.0 700 59.1
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 2.1e-217 759.6 700 59.0
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 1.8e-216 756.5 700 58.7
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 2.3e-216 756.1 728 56.7
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 2.3e-216 756.1 715 55.5
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 6.7e-216 754.6 702 58.1
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 8.8e-216 754.2 700 57.3
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 2.6e-215 752.7 708 55.8
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 4.4e-215 751.9 699 57.4
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 5.7e-215 751.5 705 57.4
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 9.7e-215 750.7 700 58.0
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.3e-214 750.4 661 60.2
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 1.3e-214 750.4 716 56.0
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 1.7e-214 750.0 692 57.4
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 4.1e-213 745.3 653 60.3
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 1.6e-212 743.4 700 57.6
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 2.0e-212 743.0 716 55.6
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 2.0e-212 743.0 696 58.0
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 1.7e-211 740.0 700 57.1
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 1.5e-210 736.9 700 56.9
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 2.7e-209 732.6 700 56.7
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 1.4e-208 730.3 704 56.4
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 6.8e-208 728.0 787 53.5
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 2.8e-206 722.6 682 56.5
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 3.7e-206 722.2 593 62.9
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 4.1e-205 718.8 685 56.1
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 1.2e-204 717.2 725 53.7
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 3.4e-199 699.1 735 53.5
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 5.4e-197 691.8 647 56.3
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 1.6e-196 690.3 701 52.4
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 2.8e-193 679.5 617 60.0
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 5.7e-191 671.8 718 50.6
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.8e-189 666.8 638 55.8
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 1.6e-188 663.7 708 50.8
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 5.9e-188 661.8 610 57.9
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 6.4e-182 641.7 702 52.0
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.0e-180 636.7 601 58.4
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.5e-178 630.6 686 52.5
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 9.9e-167 591.3 690 48.1
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 4.1e-165 585.9 615 51.7
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 9.2e-165 584.7 520 58.7
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.9e-158 563.1 421 68.4
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 2.4e-157 560.1 527 59.4
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 4.8e-153 545.8 636 50.3
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 4.9e-142 509.2 496 56.5
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 1.2e-135 488.0 706 45.8
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 2.7e-132 476.9 428 58.2
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 2.0e-111 407.5 748 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 3.8e-110 403.3 778 34.6
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 9.7e-106 388.7 711 36.3
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 3.7e-89 333.6 492 39.8
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 4.0e-83 313.5 335 49.9
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.7e-79 300.8 285 58.9
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 2.1e-76 291.2 329 46.5
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 2.3e-62 244.6 250 51.6
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 3.3e-61 240.7 276 51.4
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 4.9e-49 200.3 247 44.9
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 1.1e-45 189.1 277 44.8
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 9.6e-45 186.0 432 30.8
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 1.1e-32 146.0 159 50.9
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 4.8e-28 130.6 129 55.0
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 2.6e-26 124.8 483 26.7
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 5.8e-26 123.6 155 45.8
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 4.6e-23 114.0 285 31.2
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 6.7e-22 110.2 88 61.4
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 5.7e-13 80.5 65 66.2
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 1.3e-09 69.3 57 61.4
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.1e-08 66.2 90 41.1
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 7.2e-08 63.5 68 55.9


User provided reference genes

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