Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.8e-147 525.8 252 100.0
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.7e-77 291.2 249 59.4
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 5.0e-76 288.5 251 59.0
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 9.4e-75 284.3 248 59.3
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.2e-74 283.9 216 63.9
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.1e-74 283.1 249 57.8
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 3.6e-74 282.3 249 58.2
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.9e-74 281.2 244 58.6
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 7.9e-74 281.2 244 58.6
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.4e-73 280.4 248 57.7
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.3e-73 279.6 217 63.6
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 5.1e-73 278.5 244 59.0
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.5e-72 276.9 214 63.1
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.0e-72 276.6 250 57.2
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 4.8e-71 271.9 236 58.5
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 6.3e-71 271.6 237 58.6
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.4e-70 270.4 248 56.0
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.4e-70 270.4 201 64.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.4e-70 270.4 248 57.3
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.1e-70 269.2 295 50.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.3e-70 268.5 237 58.6
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.2e-69 267.3 258 55.0
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.3e-68 263.8 235 58.3
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 2.9e-68 262.7 238 57.6
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 3.8e-68 262.3 265 53.2
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.1e-67 260.8 267 52.4
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.9e-67 260.0 239 56.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 4.2e-67 258.8 234 56.8
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 2.1e-66 256.5 245 53.9
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 2.7e-66 256.1 224 58.5
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 6.1e-66 255.0 228 56.6
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 6.1e-66 255.0 265 50.6
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 6.1e-66 255.0 230 56.1
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 7.9e-66 254.6 235 55.3
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.0e-65 254.2 235 54.9
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.0e-65 254.2 235 54.9
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.0e-65 254.2 235 54.9
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.8e-65 253.4 236 54.2
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 5.1e-65 251.9 267 51.7
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 5.1e-65 251.9 226 55.8
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 6.7e-65 251.5 246 52.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.5e-64 250.4 243 53.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.0e-64 250.0 250 51.2
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.6e-64 249.6 228 54.4
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.7e-64 248.4 235 54.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 9.7e-64 247.7 239 54.0
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 9.7e-64 247.7 218 57.3
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.3e-63 247.3 243 52.7
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 8.2e-63 244.6 263 50.6
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.1e-62 244.2 240 52.5
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 2.4e-62 243.0 257 51.0
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.4e-62 243.0 252 52.8
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 4.1e-62 242.3 252 51.2
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 5.3e-62 241.9 228 52.6
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 9.1e-62 241.1 240 52.9
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.2e-61 240.7 236 53.4
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.2e-61 240.7 265 49.4
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.5e-61 238.8 223 55.2
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 7.7e-61 238.0 266 49.6
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 7.7e-61 238.0 250 50.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.3e-60 237.3 243 52.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.3e-60 237.3 243 52.3
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.9e-60 236.1 243 51.9
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.9e-60 236.1 243 53.1
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 5.0e-60 235.3 234 52.1
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 5.0e-60 235.3 241 49.0
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 5.0e-60 235.3 229 53.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 6.5e-60 235.0 241 49.0
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 8.5e-60 234.6 239 49.8
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 8.5e-60 234.6 251 50.6
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.1e-59 234.2 252 49.6
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.4e-59 233.8 239 51.5
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.4e-59 233.8 224 53.6
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.9e-59 233.4 258 49.2
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 3.2e-59 232.6 214 54.2
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.2e-59 232.3 210 52.9
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 7.2e-59 231.5 214 53.7
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 7.2e-59 231.5 229 52.0
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 9.4e-59 231.1 214 53.7
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 9.4e-59 231.1 246 48.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.2e-58 230.7 210 52.9
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-58 230.7 214 53.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.2e-58 230.7 214 53.7
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.2e-58 230.7 236 48.7
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.1e-58 229.9 229 52.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.7e-58 229.6 255 49.4
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.7e-58 229.6 221 51.6
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 4.7e-58 228.8 230 51.3
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.0e-58 228.0 208 52.9
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.0e-57 227.6 258 48.8
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.4e-57 227.3 208 51.9
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.4e-57 227.3 228 52.2
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.8e-57 226.9 221 53.4
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.8e-57 226.9 224 53.1
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 2.3e-57 226.5 250 48.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.7e-57 224.9 219 53.9
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 6.7e-57 224.9 241 51.0
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 8.8e-57 224.6 224 52.7
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.3e-56 222.6 243 48.1
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.4e-56 222.2 239 48.5
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.4e-56 222.2 215 50.7
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.7e-56 221.9 214 55.6
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 5.7e-56 221.9 221 51.1
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 5.7e-56 221.9 238 48.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.7e-55 220.3 214 55.1
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.7e-55 219.2 214 54.7
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.4e-54 217.2 232 49.1
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.2e-53 214.2 253 45.8
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.2e-53 214.2 238 47.1
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.0e-53 213.4 216 50.9
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.6e-53 213.0 189 55.6
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.5e-53 212.6 216 51.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.5e-53 212.2 219 52.5
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 5.0e-52 208.8 194 52.1
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 8.5e-52 208.0 220 50.9
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.5e-51 207.2 156 60.3
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.5e-51 207.2 231 49.4
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.9e-51 206.8 194 52.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.9e-51 206.8 194 51.0
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.2e-51 206.1 235 48.5
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.2e-51 205.7 211 48.3
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 9.4e-51 204.5 194 51.0
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.0e-49 201.1 203 48.8
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.8e-49 200.3 215 51.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.8e-44 182.6 147 53.7
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 9.4e-43 177.9 361 32.4
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.3e-39 167.5 140 53.6
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 3.1e-38 162.9 141 52.5
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.0e-36 155.6 101 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 8.9e-33 144.8 140 46.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.9e-28 129.8 78 74.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 3.6e-26 122.9 79 70.9
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 6.1e-26 122.1 124 50.8
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 7.5e-24 115.2 74 68.9
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 6.4e-23 112.1 82 63.4
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 3.2e-22 109.8 164 40.2
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.4e-17 94.4 79 57.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.5e-16 90.9 76 61.8
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 8.6e-12 75.1 137 38.0
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.9e-06 57.4 139 31.7


User provided reference genes

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