Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 0.0e+00 2134.0 1077 100.0
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 0.0e+00 1410.2 1071 68.6
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 0.0e+00 1386.3 1093 68.4
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 9.9e-275 950.7 1154 46.0
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 1.3e-274 950.3 1111 48.2
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 8.4e-266 921.0 1106 46.2
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 2.7e-264 916.0 1103 46.9
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 2.4e-260 902.9 1110 46.2
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 1.3e-258 897.1 1099 45.3
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 6.5e-258 894.8 1076 45.4
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 6.1e-256 888.3 1100 45.8
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 1.1e-254 884.0 1111 45.6
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 9.7e-254 880.9 1108 44.5
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 4.8e-253 878.6 1104 45.7
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 6.9e-252 874.8 1065 45.4
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 5.9e-251 871.7 1107 44.6
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.7e-250 870.2 1094 44.1
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 2.5e-249 866.3 1089 45.0
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 3.2e-249 865.9 1088 46.0
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 4.3e-246 855.5 1090 43.7
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 1.6e-240 837.0 1096 44.3
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 1.4e-239 833.9 1120 43.0
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 3.9e-239 832.4 1088 44.0
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 8.8e-239 831.2 1126 42.7
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 4.8e-237 825.5 1085 43.7
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 1.5e-235 820.5 1096 43.7
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 1.6e-232 810.4 1098 41.8
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 4.7e-232 808.9 1117 41.2
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 1.4e-231 807.4 1106 43.1
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 1.8e-231 807.0 1109 42.8
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 3.0e-231 806.2 1106 42.9
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 8.8e-231 804.7 1105 42.6
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 3.3e-230 802.7 1112 41.8
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 8.2e-229 798.1 1106 42.9
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 2.4e-228 796.6 1102 42.0
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.2e-227 794.3 1109 42.5
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 1.2e-227 794.3 1109 41.6
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 1.2e-227 794.3 1113 41.9
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 5.0e-226 788.9 1044 43.9
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 2.1e-224 783.5 1099 41.7
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 6.1e-224 781.9 1120 41.6
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 2.8e-221 773.1 1067 42.5
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 2.7e-219 766.5 1080 40.8
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 5.5e-217 758.8 1077 40.1
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 8.0e-216 755.0 1049 42.3
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 6.8e-215 751.9 1090 40.6
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 4.9e-213 745.7 1098 40.6
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 5.9e-211 738.8 1189 38.9
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 3.8e-210 736.1 1420 34.4
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 3.6e-208 729.6 1018 42.9
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 8.0e-208 728.4 1160 40.1
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 2.6e-206 723.4 1139 38.5
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 1.7e-205 720.7 890 44.7
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 2.9e-205 719.9 1092 39.5
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 5.4e-204 715.7 1045 40.6
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 5.4e-204 715.7 1040 41.4
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 7.3e-201 705.3 1111 39.2
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 2.3e-199 700.3 1075 38.7
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 5.8e-198 695.7 1093 38.2
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 1.3e-197 694.5 893 43.8
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 2.0e-195 687.2 1071 38.4
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 1.1e-193 681.4 1102 37.5
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 7.3e-193 678.7 902 43.6
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 1.2e-192 677.9 1085 37.1
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 4.7e-192 676.0 1193 36.4
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 2.0e-190 670.6 1078 37.5
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 3.4e-190 669.8 1045 38.9
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 5.8e-190 669.1 929 41.6
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 7.1e-188 662.1 1092 37.3
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 1.9e-185 654.1 1085 36.7
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 3.3e-185 653.3 951 40.8
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 6.4e-181 639.0 1066 38.0
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 8.4e-181 638.6 837 45.9
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 7.1e-180 635.6 1099 35.9
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 2.7e-179 633.6 1072 37.3
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 8.9e-175 618.6 903 40.5
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 1.0e-170 605.1 1228 33.7
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 8.7e-162 575.5 768 45.2
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 8.4e-157 558.9 800 42.0
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 7.1e-148 529.3 879 36.1
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 9.3e-148 528.9 524 50.8
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 6.0e-147 526.2 876 35.8
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 1.3e-144 518.5 1052 34.3
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 1.6e-144 518.1 794 38.9
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 3.7e-144 516.9 764 42.4
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 1.4e-143 515.0 852 38.5
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 2.5e-132 477.6 1277 28.4
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 2.0e-129 468.0 475 49.1
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 6.3e-128 463.0 457 55.1
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 5.9e-118 429.9 753 36.4
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 2.2e-112 411.4 705 38.0
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 5.0e-109 400.2 601 42.1
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 9.4e-108 396.0 766 34.9
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 9.1e-103 379.4 751 33.8
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.0e-101 375.9 490 42.2
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 1.3e-101 375.6 544 39.5
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 6.1e-91 340.1 605 34.9
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.4e-89 334.0 731 33.5
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 9.2e-87 326.2 1156 25.3
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 6.4e-80 303.5 475 38.1
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.1e-74 286.2 513 39.2
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 4.9e-72 277.3 502 36.1
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 3.9e-69 267.7 342 47.7
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.2e-67 262.7 280 47.5
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 5.8e-65 253.8 252 53.6
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 3.9e-61 241.1 339 38.6
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 3.8e-56 224.6 1053 24.4
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 4.9e-56 224.2 334 38.3
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 1.9e-55 222.2 281 40.2
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 1.7e-53 215.7 191 52.9
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 1.3e-51 209.5 260 45.0
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 1.5e-49 202.6 306 37.3
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 2.0e-49 202.2 193 54.9
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 1.3e-48 199.5 197 53.8
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.9e-48 198.4 188 48.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.8e-48 198.0 994 23.7
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.8e-42 179.1 179 49.7
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.1e-42 178.3 201 50.7
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 1.3e-40 172.9 157 53.5
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.2e-40 172.2 206 46.1
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 1.3e-35 156.4 159 44.7
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.1e-31 143.3 133 57.1
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.4e-26 125.6 129 51.9
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 7.6e-25 120.6 97 66.0
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 3.4e-17 95.1 120 45.0
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 3.8e-16 91.7 174 31.0
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 1.6e-14 86.3 114 39.5
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.7e-11 76.3 106 43.4
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 4.1e-10 71.6 185 24.9
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 6.9e-10 70.9 113 38.9
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 1.3e-08 66.6 149 26.8
Medtr7g011850 Medicago truncatula HOM05D002497 ORTHO05D002697 2.9e-08 65.5 155 31.0
Cc07_g03780 Coffea canephora HOM05D002497 ORTHO05D002697 6.5e-08 64.3 158 29.7
Thecc.04G089300 Theobroma cacao HOM05D002497 ORTHO05D002697 1.1e-07 63.5 153 29.4
Nitab4.5_0000212g0150 Nicotiana tabacum HOM05D002497 ORTHO05D002697 1.4e-07 63.2 158 28.5
ClCG11G004610 Citrullus lanatus HOM05D002497 ORTHO05D002697 2.5e-07 62.4 153 30.7
Lsat_1_v5_gn_4_136001 Lactuca sativa HOM05D005682 ORTHO05D007050 2.5e-07 62.4 46 63.0
Duzib264G0678 Durio zibethinus HOM05D002497 ORTHO05D002697 3.2e-07 62.0 157 29.9
Lalb_Chr10g0093261 Lupinus albus HOM05D002497 ORTHO05D002697 3.2e-07 62.0 158 28.5
Psat3g198800 Pisum sativum HOM05D002497 ORTHO05D002697 3.2e-07 62.0 156 30.8
QL02p039295 Quercus lobata HOM05D002497 ORTHO05D002697 3.2e-07 62.0 162 28.4
SHI16731 Sapria himalayana HOM05D002497 ORTHO05D002697 3.2e-07 62.0 151 26.5
Sopen02g016240 Solanum pennellii HOM05D002497 ORTHO05D002697 3.2e-07 62.0 155 29.7
COL.COLO4_12248 Corchorus olitorius HOM05D002497 ORTHO05D002697 4.2e-07 61.6 157 29.9
Os05g0420200 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 4.2e-07 61.6 156 28.8
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.2e-07 61.6 172 30.8
ATR0598G145 Amborella trichopoda HOM05D002497 ORTHO05D002697 7.2e-07 60.8 160 28.1
Aqoxy3G03548 Aquilegia oxysepala HOM05D002497 ORTHO05D002697 7.2e-07 60.8 198 27.3
Nitab4.5_0003347g0120 Nicotiana tabacum HOM05D002497 ORTHO05D002697 7.2e-07 60.8 158 28.5
Ah.05g168740 Amaranthus hybridus HOM05D002497 ORTHO05D002697 9.4e-07 60.5 219 26.0
TWI60G1450 Tripterygium wilfordii HOM05D002497 ORTHO05D002697 9.4e-07 60.5 156 28.2
AUR62019571 Chenopodium quinoa HOM05D002497 ORTHO05D002697 1.2e-06 60.1 158 28.5
Migut.H00665 Erythranthe guttata HOM05D002497 ORTHO05D002697 1.2e-06 60.1 157 28.0
AUR62043188 Chenopodium quinoa HOM05D002497 ORTHO05D002697 1.6e-06 59.7 158 28.5
ECA232G3320 Erigeron canadensis HOM05D002497 ORTHO05D002697 1.6e-06 59.7 155 29.0
Aa31LG6G8110 Aethionema arabicum HOM05D002497 ORTHO05D002697 2.1e-06 59.3 151 29.1
PSO017G0358 Papaver somniferum HOM05D002497 ORTHO05D002697 2.1e-06 59.3 161 26.7
Sabra04G0066500 Salix brachista HOM05D002497 ORTHO05D002697 2.1e-06 59.3 160 28.1
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 2.1e-06 59.3 155 28.4
MSTRG.23908 Avicennia marina HOM05D002497 ORTHO05D002697 2.7e-06 58.9 158 29.7
FAN02G1345 Fragaria x ananassa HOM05D002497 ORTHO05D002697 2.7e-06 58.9 178 27.5
FAN05G0632 Fragaria x ananassa HOM05D002497 ORTHO05D002697 2.7e-06 58.9 178 28.1
MD17G1054800 Malus domestica HOM05D002497 ORTHO05D002697 2.7e-06 58.9 190 27.9
Phvul.008G040000 Phaseolus vulgaris HOM05D002497 ORTHO05D002697 2.7e-06 58.9 160 28.8
unitig_736.g22241 Utricularia gibba HOM05D002497 ORTHO05D002697 2.7e-06 58.9 165 30.3
Actinidia01962 Actinidia chinensis HOM05D002497 ORTHO05D002697 3.6e-06 58.5 158 25.3
Glyma.18G263600 Glycine max HOM05D002497 ORTHO05D002697 3.6e-06 58.5 159 27.7
Gohir.D04G045900 Gossypium hirsutum HOM05D002497 ORTHO05D002697 3.6e-06 58.5 153 28.8
Gorai.012G051100 Gossypium raimondii HOM05D002497 ORTHO05D002697 3.6e-06 58.5 153 28.8
MBI19_g13737_MAGBIO Magnolia biondii HOM05D002497 ORTHO05D002697 3.6e-06 58.5 178 26.4
Peaxi162Scf00629g00316 Petunia axillaris HOM05D002497 ORTHO05D002697 3.6e-06 58.5 158 27.8
arahy.Tifrunner.gnm1.ann1.NGDJ3K Arachis hypogaea HOM05D002497 ORTHO05D002697 4.7e-06 58.2 224 25.9
PSO478G4048 Papaver somniferum HOM05D002497 ORTHO05D002697 4.7e-06 58.2 161 26.1
PGSC0003DMG401025150 Solanum tuberosum HOM05D002497 ORTHO05D002697 4.7e-06 58.2 158 28.5
THA.LOC104822985 Tarenaya hassleriana HOM05D002497 ORTHO05D002697 4.7e-06 58.2 184 26.1
VMungo1383G3650 Vigna mungo HOM05D002497 ORTHO05D002697 4.7e-06 58.2 159 27.0
CiPaw.04G013700 Carya illinoinensis HOM05D002497 ORTHO05D002697 6.1e-06 57.8 159 27.7
Hma1.2p1_0442F.1_g153910 Hydrangea macrophylla HOM05D002497 ORTHO05D002697 6.1e-06 57.8 151 27.8
Sed0019044 Sechium edule HOM05D002497 ORTHO05D002697 6.1e-06 57.8 161 28.6
Sc23g0007030 Simmondsia chinensis HOM05D002497 ORTHO05D002697 6.1e-06 57.8 151 27.8
Solyc02g067050.3 Solanum lycopersicum HOM05D002497 ORTHO05D002697 6.1e-06 57.8 191 26.7
TAR371G0112 Trochodendron aralioides HOM05D002497 ORTHO05D002697 6.1e-06 57.8 157 28.0
MELO3C022019.2 Cucumis melo HOM05D002497 ORTHO05D002697 7.9e-06 57.4 155 29.0
Dinv33800 Davidia involucrata HOM05D002497 ORTHO05D002697 7.9e-06 57.4 158 27.8
Glyma.08G241200 Glycine max HOM05D002497 ORTHO05D002697 7.9e-06 57.4 158 27.2


User provided reference genes

Program Settings