Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 4.0e-131 471.5 245 100.0
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 2.2e-105 386.0 245 80.8
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 7.4e-101 370.9 245 78.0
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.4e-88 330.1 231 71.4
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 2.5e-88 329.3 236 70.3
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 3.0e-86 322.4 211 76.8
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 8.8e-86 320.9 240 68.8
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 2.6e-85 319.3 237 70.9
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 4.4e-85 318.5 226 70.4
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 5.7e-85 318.2 237 70.0
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 9.7e-85 317.4 237 67.5
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 9.7e-85 317.4 237 70.5
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.3e-84 317.0 231 68.8
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.8e-84 315.8 236 67.4
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 8.2e-84 314.3 222 70.7
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 8.2e-84 314.3 206 74.8
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.1e-83 313.9 206 74.8
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.4e-83 313.5 227 67.8
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 2.4e-83 312.8 225 72.0
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 2.4e-83 312.8 228 68.0
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 4.1e-83 312.0 230 69.1
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 5.3e-83 311.6 227 69.6
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 5.3e-83 311.6 224 70.1
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 1.5e-82 310.1 226 69.0
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 2.6e-82 309.3 226 69.9
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 2.6e-82 309.3 202 73.8
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.6e-82 309.3 207 71.5
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.6e-82 309.3 202 73.8
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 4.5e-82 308.5 228 67.1
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 4.5e-82 308.5 226 70.4
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 4.5e-82 308.5 226 70.4
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 4.5e-82 308.5 228 69.3
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 5.9e-82 308.1 229 68.6
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 5.9e-82 308.1 229 67.7
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 5.9e-82 308.1 218 69.7
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 5.9e-82 308.1 202 72.8
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 1.0e-81 307.4 229 67.7
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 1.0e-81 307.4 237 66.7
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 1.3e-81 307.0 225 67.1
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.3e-81 307.0 228 68.0
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 1.3e-81 307.0 201 74.1
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.3e-81 307.0 205 75.1
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.2e-81 306.2 228 67.5
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.9e-81 305.8 228 67.5
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 3.8e-81 305.4 229 65.9
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.8e-81 305.4 242 62.4
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 3.8e-81 305.4 236 66.9
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 5.0e-81 305.1 226 68.1
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 6.5e-81 304.7 226 68.1
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 6.5e-81 304.7 234 67.5
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 6.5e-81 304.7 254 62.2
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 6.5e-81 304.7 230 67.0
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 6.5e-81 304.7 228 68.9
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 8.5e-81 304.3 202 72.3
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 8.5e-81 304.3 207 70.5
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 8.5e-81 304.3 236 69.1
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 1.1e-80 303.9 230 67.0
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 1.4e-80 303.5 230 67.0
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 1.9e-80 303.1 227 67.4
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 2.5e-80 302.8 243 64.6
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 2.5e-80 302.8 237 65.8
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 3.2e-80 302.4 206 73.8
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 4.2e-80 302.0 237 64.1
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 7.2e-80 301.2 224 66.1
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 7.2e-80 301.2 222 68.0
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 9.4e-80 300.8 237 68.4
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.2e-79 300.4 243 64.2
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.2e-79 300.4 226 65.5
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 1.2e-79 300.4 209 67.5
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 2.1e-79 299.7 233 68.2
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 2.7e-79 299.3 240 62.5
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 2.7e-79 299.3 240 62.5
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 2.7e-79 299.3 204 71.6
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 4.7e-79 298.5 236 68.2
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 6.1e-79 298.1 240 65.0
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 7.9e-79 297.7 241 61.4
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 2.0e-77 293.1 208 67.3
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 2.0e-77 293.1 208 71.6
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 4.4e-77 292.0 233 62.7
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 1.7e-76 290.0 207 68.6
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 2.2e-76 289.7 226 62.4
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 3.7e-76 288.9 215 65.1
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.4e-75 287.0 223 63.2
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.4e-75 287.0 235 62.1
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 1.2e-74 283.9 206 67.0
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 3.5e-74 282.3 206 66.5
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 3.5e-74 282.3 206 66.5
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 4.5e-74 282.0 243 58.0
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 7.7e-74 281.2 239 59.8
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.7e-73 280.0 227 61.2
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 6.5e-73 278.1 242 58.3
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 5.5e-72 275.0 223 62.3
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 2.1e-71 273.1 193 71.5
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 5.2e-70 268.5 216 62.5
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 9.4e-64 247.7 196 62.8
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 8.0e-63 244.6 375 42.1
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 5.9e-58 228.4 201 57.7
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 1.3e-57 227.3 238 52.5
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 5.0e-57 225.3 235 54.0
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.5e-56 223.8 232 51.7
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 9.5e-56 221.1 201 54.2
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 4.7e-55 218.8 196 60.2
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 4.3e-48 195.7 168 64.9
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.2e-45 187.6 136 68.4
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 1.6e-42 177.2 246 41.5
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.2e-37 161.0 98 78.6
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 3.7e-36 156.0 115 66.1
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 8.9e-30 134.8 129 50.4
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.5e-21 107.5 187 39.6
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 3.2e-19 99.8 79 67.1
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 2.3e-09 67.0 211 27.0
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 4.3e-08 62.8 197 26.4
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 7.3e-08 62.0 198 28.3
RcHm_v2.0_Chr6g0291411 Rosa chinensis HOM05D001530 ORTHO05D003676 9.6e-08 61.6 208 26.4
CANSAT25G1297 Cannabis sativa HOM05D001530 ORTHO05D003676 1.3e-07 61.2 227 27.3
FAN27G3491 Fragaria x ananassa HOM05D001530 ORTHO05D003676 1.3e-07 61.2 193 28.5
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 1.6e-07 60.8 237 26.2
FAN20G0938 Fragaria x ananassa HOM05D001530 ORTHO05D003676 2.8e-07 60.1 189 28.6
FAN24G2525 Fragaria x ananassa HOM05D001530 ORTHO05D003676 2.8e-07 60.1 189 28.6
MD03G1267800 Malus domestica HOM05D001530 ORTHO05D003676 3.6e-07 59.7 208 27.4
CSS0047387 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D003676 4.8e-07 59.3 202 27.7
FvH4_2g23830 Fragaria vesca HOM05D001530 ORTHO05D003676 6.2e-07 58.9 222 26.6
SalBow2G1380 Salvia bowleyana HOM05D001530 ORTHO05D003676 6.2e-07 58.9 207 26.6
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 6.2e-07 58.9 237 24.9
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 1.1e-06 58.2 198 27.3
Thhalv10009966m.g Eutrema salsugineum HOM05D001530 ORTHO05D003676 1.1e-06 58.2 208 27.4
AL1G12750 Arabidopsis lyrata HOM05D001530 ORTHO05D003676 1.4e-06 57.8 233 25.3
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 1.4e-06 57.8 187 24.1
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 1.4e-06 57.8 239 25.1
Lsat_1_v5_gn_5_187301 Lactuca sativa HOM05D001530 ORTHO05D003676 1.4e-06 57.8 215 27.9
BcaC07g42263 Brassica carinata HOM05D001530 ORTHO05D003676 1.8e-06 57.4 228 25.4
BraA09t42168Z Brassica rapa HOM05D001530 ORTHO05D003676 3.1e-06 56.6 229 25.8
Gohir.A02G030900 Gossypium hirsutum HOM05D001530 ORTHO05D003676 3.1e-06 56.6 237 23.6
Sc17g0004010 Simmondsia chinensis HOM05D001530 ORTHO05D003676 3.1e-06 56.6 197 26.4
AT1G03260 Arabidopsis thaliana HOM05D001530 ORTHO05D003676 4.0e-06 56.2 233 24.9
A09p68320 Brassica napus HOM05D001530 ORTHO05D003676 4.0e-06 56.2 229 25.3
C08p52880 Brassica napus HOM05D001530 ORTHO05D003676 4.0e-06 56.2 233 24.9
BolC8t52804H Brassica oleracea HOM05D001530 ORTHO05D003676 4.0e-06 56.2 233 24.9
Carub.0001s0237 Capsella rubella HOM05D001530 ORTHO05D003676 4.0e-06 56.2 233 25.3
DCAR_024580 Daucus carota HOM05D001530 ORTHO05D003676 6.9e-06 55.5 231 26.0
arahy.Tifrunner.gnm1.ann1.AUQ61E Arachis hypogaea HOM05D001530 ORTHO05D003676 9.0e-06 55.1 232 26.7
Sp1g02260 Schrenkiella parvula HOM05D001530 ORTHO05D003676 9.0e-06 55.1 239 25.5


User provided reference genes

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