Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 2.0e-51 205.3 92 100.0
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 5.7e-14 80.9 34 94.1
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.3e-13 79.7 34 91.2
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 2.8e-13 78.6 34 88.2
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 4.9e-13 77.8 34 88.2
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 6.3e-13 77.4 34 88.2
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 6.3e-13 77.4 34 88.2
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 6.3e-13 77.4 34 85.3
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 6.3e-13 77.4 34 85.3
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 6.3e-13 77.4 34 85.3
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 8.3e-13 77.0 34 85.3
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 8.3e-13 77.0 34 91.2
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-12 76.6 34 85.3
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-12 76.6 34 85.3
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.1e-12 76.6 34 85.3
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 1.4e-12 76.3 34 85.3
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.4e-12 76.3 34 85.3
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.8e-12 75.9 34 85.3
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.8e-12 75.9 34 88.2
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.4e-12 75.5 34 82.4
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 2.4e-12 75.5 34 82.4
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.4e-12 75.5 34 82.4
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.1e-12 75.1 34 82.4
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.1e-12 75.1 34 82.4
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 3.1e-12 75.1 34 82.4
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 3.1e-12 75.1 34 82.4
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 4.1e-12 74.7 34 82.4
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 4.1e-12 74.7 34 82.4
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 4.1e-12 74.7 34 82.4
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 5.4e-12 74.3 34 85.3
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 5.4e-12 74.3 34 85.3
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 5.4e-12 74.3 34 79.4
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 5.4e-12 74.3 34 82.4
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 7.0e-12 73.9 34 79.4
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 7.0e-12 73.9 34 79.4
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 9.2e-12 73.6 34 82.4
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.2e-11 73.2 34 79.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.2e-11 73.2 34 82.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.2e-11 73.2 34 82.4
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-11 73.2 34 82.4
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-11 73.2 34 82.4
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-11 73.2 34 82.4
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.6e-11 72.8 34 82.4
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.6e-11 72.8 34 82.4
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.6e-11 72.8 34 79.4
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.6e-11 72.8 34 82.4
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.0e-11 72.4 34 82.4
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.0e-11 72.4 34 79.4
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 2.7e-11 72.0 34 79.4
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 2.7e-11 72.0 34 76.5
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 2.7e-11 72.0 34 85.3
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 2.7e-11 72.0 34 85.3
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.7e-11 72.0 34 79.4
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 3.5e-11 71.6 34 76.5
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 3.5e-11 71.6 34 79.4
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.5e-11 71.6 34 79.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 3.5e-11 71.6 34 82.4
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 4.5e-11 71.2 34 79.4
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 5.9e-11 70.9 34 82.4
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 5.9e-11 70.9 34 73.5
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 5.9e-11 70.9 34 76.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 5.9e-11 70.9 34 76.5
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 7.8e-11 70.5 34 76.5
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 7.8e-11 70.5 34 76.5
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.0e-10 70.1 34 76.5
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 1.0e-10 70.1 34 76.5
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.3e-10 69.7 34 73.5
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.7e-10 69.3 34 76.5
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.7e-10 69.3 34 76.5
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.7e-10 69.3 34 76.5
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.7e-10 69.3 34 76.5
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 2.3e-10 68.9 34 79.4
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 2.3e-10 68.9 34 79.4
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 2.3e-10 68.9 34 76.5
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 2.9e-10 68.6 34 73.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 2.9e-10 68.6 34 73.5
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 5.0e-10 67.8 34 73.5
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 5.0e-10 67.8 34 73.5
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 8.6e-10 67.0 34 73.5
ECA238G2792 Erigeron canadensis HOM05D011820 ORTHO05D004022 1.1e-09 66.6 51 62.7
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 4.3e-09 64.7 34 73.5
ECA232G3028 Erigeron canadensis HOM05D011820 ORTHO05D004022 5.6e-09 64.3 50 58.0
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 7.3e-09 63.9 34 67.6
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 6.1e-08 60.8 34 64.7
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 1.0e-07 60.1 34 61.8
ECA247G1280 Erigeron canadensis HOM05D034482 ORTHO05D004022 1.4e-07 59.7 79 45.6
ECA232G2260 Erigeron canadensis HOM05D034482 ORTHO05D004022 2.3e-07 58.9 61 54.1
ECA232G2861 Erigeron canadensis HOM05D011820 ORTHO05D004022 8.9e-07 57.0 52 53.8
ECA247G0654 Erigeron canadensis HOM05D011820 ORTHO05D004022 1.5e-06 56.2 25 92.0
ECA233G4417 Erigeron canadensis HOM05D002406 ORTHO05D007964 4.4e-06 54.7 35 68.6
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 9.8e-06 53.5 33 60.6


User provided reference genes

Program Settings