Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 5.5e-92 341.3 215 100.0
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.6e-33 146.4 133 65.4
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.5e-28 130.6 137 58.4
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.5e-28 130.6 132 60.6
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.5e-28 129.8 157 53.5
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.5e-28 129.8 132 60.6
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 4.3e-28 129.0 172 47.7
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 7.3e-28 128.3 122 63.1
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 7.3e-28 128.3 135 57.0
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 7.3e-28 128.3 132 59.8
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.2e-27 127.5 128 59.4
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-27 127.5 132 58.3
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 2.8e-27 126.3 157 52.9
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.8e-27 126.3 134 59.0
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.6e-27 125.9 121 62.0
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.7e-27 125.6 130 56.9
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 4.7e-27 125.6 166 49.4
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 6.2e-27 125.2 136 58.1
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 6.2e-27 125.2 145 55.2
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 8.1e-27 124.8 141 55.3
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 8.1e-27 124.8 134 58.2
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 8.1e-27 124.8 134 57.5
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.8e-26 123.6 125 58.4
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 1.8e-26 123.6 124 56.5
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 3.1e-26 122.9 125 56.0
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 3.1e-26 122.9 154 52.6
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 3.1e-26 122.9 115 64.3
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 3.1e-26 122.9 141 54.6
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 5.2e-26 122.1 132 56.8
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 5.2e-26 122.1 149 51.7
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 6.9e-26 121.7 132 56.8
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 8.9e-26 121.3 124 56.5
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 8.9e-26 121.3 141 56.0
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.2e-25 120.9 134 55.2
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.2e-25 120.9 132 53.8
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 2.6e-25 119.8 125 57.6
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 2.6e-25 119.8 129 55.8
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 2.6e-25 119.8 134 56.0
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 4.4e-25 119.0 125 56.0
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 5.8e-25 118.6 141 52.5
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 5.8e-25 118.6 122 59.8
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 7.6e-25 118.2 142 51.4
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 7.6e-25 118.2 174 48.9
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 7.6e-25 118.2 197 44.2
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.3e-24 117.5 120 59.2
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.7e-24 117.1 134 50.7
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.7e-24 117.1 160 50.0
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.2e-24 116.7 124 55.6
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 2.2e-24 116.7 131 56.5
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 2.9e-24 116.3 125 58.4
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 3.8e-24 115.9 132 56.1
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 6.4e-24 115.2 148 52.0
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 6.4e-24 115.2 175 45.1
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 6.4e-24 115.2 172 42.4
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 1.9e-23 113.6 153 50.3
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.4e-23 113.2 132 53.8
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 2.4e-23 113.2 143 50.3
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 3.2e-23 112.8 131 53.4
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.2e-23 112.8 155 50.3
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 4.2e-23 112.5 140 50.7
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 5.4e-23 112.1 153 49.7
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 7.1e-23 111.7 125 54.4
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 7.1e-23 111.7 132 50.8
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 9.3e-23 111.3 131 55.7
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.2e-22 110.9 121 57.0
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.2e-22 110.9 132 51.5
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.2e-22 110.9 140 50.7
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 2.7e-22 109.8 160 48.8
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.7e-22 109.8 118 57.6
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 2.7e-22 109.8 132 50.8
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.7e-22 109.8 130 48.5
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.5e-22 109.4 132 52.3
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 3.5e-22 109.4 152 48.0
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 3.5e-22 109.4 123 52.8
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 4.6e-22 109.0 132 52.3
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 4.6e-22 109.0 149 50.3
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 4.6e-22 109.0 115 57.4
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.0e-21 107.8 129 49.6
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 1.0e-21 107.8 131 50.4
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 1.0e-21 107.8 153 46.4
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.3e-21 107.5 129 49.6
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.3e-21 107.5 129 49.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.3e-21 107.5 102 65.7
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.7e-21 107.1 129 50.4
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.7e-21 107.1 172 39.0
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 2.3e-21 106.7 127 53.5
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 2.3e-21 106.7 119 55.5
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 2.3e-21 106.7 132 51.5
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 3.0e-21 106.3 140 46.4
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 3.0e-21 106.3 141 48.9
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 3.0e-21 106.3 135 47.4
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.0e-21 106.3 135 50.4
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 3.0e-21 106.3 130 50.8
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 3.0e-21 106.3 153 45.1
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 3.0e-21 106.3 125 52.0
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 6.6e-21 105.1 130 50.0
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 6.6e-21 105.1 132 50.8
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 8.7e-21 104.8 125 49.6
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.1e-20 104.4 139 51.1
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 1.5e-20 104.0 125 52.0
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.5e-20 103.2 162 44.4
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 3.3e-20 102.8 108 59.3
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 3.3e-20 102.8 140 47.9
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 5.6e-20 102.1 129 48.8
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 9.6e-20 101.3 128 50.0
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-19 100.5 129 49.6
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.6e-19 100.5 135 45.2
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 2.1e-19 100.1 129 48.8
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 2.1e-19 100.1 129 48.8
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 2.8e-19 99.8 129 48.8
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 2.8e-19 99.8 129 48.8
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 3.6e-19 99.4 107 52.3
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 3.1e-18 96.3 125 47.2
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 9.0e-18 94.7 132 45.5
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.5e-17 94.0 122 50.8
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.6e-17 93.2 180 39.4
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 8.4e-16 88.2 125 46.4
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.4e-15 87.4 89 58.4
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 3.2e-15 86.3 104 54.8
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 1.0e-13 81.3 125 43.2
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 1.0e-13 81.3 125 43.2
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 1.0e-13 81.3 125 43.2
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.3e-13 80.9 129 40.3
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 5.1e-13 79.0 124 38.7
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 8.7e-13 78.2 67 70.1
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 2.5e-12 76.6 124 45.2
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 9.6e-12 74.7 132 41.7
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 1.4e-10 70.9 132 41.7
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 3.1e-10 69.7 122 41.0
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 3.1e-10 69.7 81 56.8
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.2e-09 67.8 87 54.0
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 3.4e-09 66.2 138 32.6
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 4.5e-09 65.9 72 54.2
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 5.8e-09 65.5 129 39.5
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 5.8e-09 65.5 98 42.9
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.7e-08 63.9 127 37.8
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 3.8e-08 62.8 81 46.9
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.2e-07 59.3 86 50.0
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.2e-07 59.3 86 50.0
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 6.0e-06 55.5 130 34.6


User provided reference genes

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