Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 0.0e+00 1788.9 1114 100.0
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.0e-266 924.1 1164 58.1
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 6.0e-198 695.7 1182 52.5
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 3.4e-177 626.7 1139 50.6
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 3.6e-163 580.1 1295 45.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.8e-152 543.5 1247 45.7
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 9.3e-151 538.9 1075 47.7
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.0e-145 521.2 1343 41.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.2e-128 464.5 1100 42.1
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 7.0e-122 443.0 1265 42.6
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 3.6e-118 430.6 1358 40.4
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.4e-109 402.1 1394 39.2
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.0e-109 400.6 747 40.7
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.2e-105 389.0 724 40.2
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.3e-104 385.6 1141 42.3
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.9e-104 384.4 1381 38.4
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.2e-100 372.5 837 38.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 2.0e-100 371.7 1341 38.6
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 3.4e-100 370.9 1283 41.4
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.8e-99 367.9 1428 36.5
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.1e-98 362.8 1332 33.3
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 2.3e-96 358.2 1234 39.7
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.6e-96 356.3 640 40.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-93 348.6 1287 34.2
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.2e-91 341.7 1324 36.9
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.3e-91 339.7 621 39.9
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.8e-90 338.6 1331 36.3
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.2e-89 335.9 633 40.9
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.7e-89 334.7 1222 39.0
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.5e-89 334.3 1335 39.3
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.8e-86 324.7 1235 38.5
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 4.7e-86 323.9 660 38.3
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.0e-84 318.5 1326 38.7
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.0e-84 318.5 1326 38.7
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.6e-81 307.4 1113 33.5
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.0e-80 306.2 1326 39.8
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.7e-80 305.4 1288 31.4
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.8e-78 298.1 1351 34.9
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.1e-77 296.2 1174 34.0
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 5.8e-76 290.4 1269 30.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.4e-74 285.8 1073 31.8
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.2e-74 284.6 1142 32.0
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 6.0e-73 280.4 1352 35.2
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 4.0e-69 267.7 1074 31.1
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 2.2e-67 261.9 750 34.1
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.6e-65 254.2 760 33.0
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 4.6e-65 254.2 681 34.2
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.8e-65 253.4 629 34.7
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.9e-64 251.1 495 37.8
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 8.6e-64 250.0 627 34.3
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.6e-63 247.3 1292 36.4
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.2e-62 246.1 1040 32.4
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.8e-61 242.3 807 32.6
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 5.2e-61 240.7 663 33.8
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.2e-59 235.3 1031 37.1
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.1e-58 233.0 742 34.0
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 3.5e-57 228.0 765 31.8
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 4.6e-57 227.6 754 30.8
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.1e-56 224.2 768 32.8
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 4.3e-55 221.1 1166 31.6
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 4.3e-55 221.1 1170 33.0
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.6e-55 220.7 1235 35.6
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.3e-54 219.5 1239 32.5
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.6e-54 219.2 728 32.7
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 3.6e-54 218.0 802 31.9
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 8.1e-54 216.9 820 31.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 3.4e-52 211.5 1040 34.9
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 9.9e-52 209.9 811 32.1
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 6.4e-51 207.2 1097 35.0
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.9e-50 205.7 1223 31.9
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.4e-50 205.3 738 31.0
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 3.2e-50 204.9 980 36.6
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 5.4e-50 204.1 1079 34.2
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-49 203.0 724 31.5
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.0e-48 199.9 1177 31.5
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.1e-47 196.4 809 30.7
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.3e-46 193.0 805 30.3
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 4.8e-46 191.0 1244 32.2
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.2e-46 190.7 577 32.1
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.1e-45 189.9 1266 32.3
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 2.4e-45 188.7 808 29.6
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 5.3e-45 187.6 1233 35.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 9.0e-45 186.8 709 30.5
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.5e-44 186.0 675 29.3
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-44 186.0 808 29.2
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.5e-44 186.0 1035 30.6
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.4e-44 184.9 809 29.4
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.5e-44 184.5 755 29.9
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.6e-44 183.7 627 30.8
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.6e-44 183.7 811 29.7
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.7e-43 182.6 1251 29.0
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 2.9e-43 181.8 798 28.6
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 2.9e-43 181.8 806 29.5
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 8.4e-43 180.3 1212 33.4
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.4e-42 179.5 1224 29.2
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.4e-42 179.5 1165 33.3
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.9e-42 179.1 627 30.5
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.4e-42 178.7 1214 30.3
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 7.1e-42 177.2 821 29.8
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.1e-41 175.6 1251 32.2
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.1e-41 175.6 1164 34.3
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.5e-41 174.9 680 30.1
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.3e-40 172.2 756 28.6
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 5.6e-39 167.5 1227 29.6
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 9.6e-39 166.8 538 33.3
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.6e-38 166.0 1255 30.4
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 2.1e-38 165.6 571 31.3
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.8e-38 165.2 1292 31.6
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 4.8e-38 164.5 714 29.3
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.4e-37 162.9 1203 30.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 2.4e-37 162.2 627 29.5
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 3.1e-37 161.8 582 32.8
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 6.9e-37 160.6 614 32.6
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.5e-36 159.5 1143 28.1
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 3.4e-36 158.3 741 28.9
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.4e-36 158.3 614 30.5
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 4.5e-36 157.9 1059 34.0
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 5.8e-36 157.5 800 27.5
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.8e-36 157.5 716 29.7
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.7e-35 156.0 488 32.0
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 2.9e-35 155.2 739 28.8
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.9e-35 155.2 1188 33.3
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 4.9e-35 154.5 1055 28.1
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.9e-34 152.5 613 30.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.9e-34 152.5 1274 32.9
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.5e-34 152.1 789 27.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 3.2e-34 151.8 809 28.3
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 9.3e-34 150.2 1195 30.5
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.5e-33 148.3 711 29.4
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 6.0e-33 147.5 623 29.4
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 7.9e-33 147.1 562 30.4
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.1e-31 143.3 759 29.5
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.1e-31 143.3 545 30.8
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.5e-31 142.1 1072 27.5
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 5.7e-31 141.0 794 28.2
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.6e-30 139.4 1229 28.2
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.7e-30 138.3 934 34.0
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 6.3e-30 137.5 1273 28.9
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.4e-29 135.6 603 28.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.9e-27 128.6 1233 28.0
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.9e-26 125.9 543 28.7
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.5e-26 125.6 1235 30.1
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 7.2e-26 124.0 1108 32.7
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.1e-25 122.5 715 28.1
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.8e-24 119.4 616 27.1
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.3e-24 119.0 1193 27.4
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.8e-21 109.4 817 26.8
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.0e-21 107.1 337 38.3
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.4e-18 97.1 776 25.0
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 4.6e-17 94.7 447 28.2
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.0e-16 92.0 663 26.2
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.4e-15 87.4 546 33.9
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-13 83.2 383 32.9
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.4e-12 78.6 364 25.3
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.2e-11 75.9 1039 28.1
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.2e-11 75.9 1105 26.8
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.0e-11 74.7 142 35.9
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.0e-11 74.7 142 35.9
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.7e-09 68.9 579 24.9
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.0e-07 62.8 338 26.6
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.3e-06 60.1 207 38.6
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-06 59.3 1172 21.2


User provided reference genes

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