Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 4899.7 2503 100.0
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 4173.2 2552 84.7
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 4052.3 2584 82.7
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3484.9 2561 71.5
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3428.6 2567 70.9
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3345.8 2566 69.6
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3312.7 2565 68.2
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3286.1 2579 67.4
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3272.6 2561 67.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3268.8 2560 67.8
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3248.8 2566 67.6
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3244.5 2574 66.7
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3243.4 2568 66.9
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3236.0 2609 66.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3216.8 2568 66.9
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3215.6 2570 66.5
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3210.6 2603 66.1
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3208.7 2574 66.4
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3207.2 2578 66.1
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3205.6 2577 66.6
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3204.8 2591 65.9
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3192.5 2566 66.1
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3192.1 2569 66.3
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3185.2 2561 65.9
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3180.6 2573 65.2
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3176.3 2564 65.9
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3175.2 2574 65.8
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3168.6 2566 65.7
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3152.1 2571 65.2
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3145.9 2891 60.5
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3143.2 2560 65.4
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3139.0 2571 65.1
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3136.7 2571 64.6
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3133.2 2562 65.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3122.4 2576 64.7
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3119.7 2566 64.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3118.9 2562 64.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3097.4 2620 64.0
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3078.9 2570 64.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3075.8 2361 69.4
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3066.2 2566 63.6
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3053.5 2578 63.7
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3045.8 2581 63.1
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3044.6 2578 63.5
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3029.2 2566 63.4
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3016.5 2568 62.9
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3005.3 2574 62.9
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 2998.8 2583 62.1
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2972.2 2569 62.1
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2938.3 2228 69.2
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2912.5 2565 61.3
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2908.2 2569 61.4
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2905.2 2564 61.3
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2894.4 2559 61.5
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2887.4 2580 61.2
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2873.2 2564 60.8
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2859.7 2575 60.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2853.9 2553 60.6
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2851.2 2559 60.5
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2842.4 2569 59.7
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2839.3 2586 59.9
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2832.4 2592 59.6
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2815.0 2572 59.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2806.2 2440 62.3
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2775.0 2628 59.4
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2716.0 2590 57.8
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2706.0 2233 64.8
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2700.2 1869 75.3
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2678.3 2092 68.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2533.8 1889 70.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2513.4 2040 65.3
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2374.4 1728 71.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2289.2 1641 73.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2177.1 2326 52.3
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2105.1 1722 66.4
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2069.7 1858 60.1
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2041.9 1774 63.4
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1989.2 1685 63.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 1986.5 2693 44.9
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1972.2 2772 43.8
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1890.2 1759 58.9
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1631.7 2515 41.7
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1618.6 1146 73.6
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1575.1 1098 74.9
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1553.5 1187 68.9
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1533.5 1413 60.0
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1525.0 1177 69.5
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1489.6 1142 69.4
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1482.2 1150 68.6
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1441.4 2780 36.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1413.7 1512 54.0
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1396.7 2656 36.6
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1325.5 853 78.9
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1276.5 1196 59.0
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1275.4 1651 46.8
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1243.4 1502 49.6
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1213.7 1104 61.3
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1199.9 900 67.9
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1177.9 744 80.0
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.1e-291 1007.3 672 76.0
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 2.6e-270 937.2 1155 47.4
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.3e-265 920.2 1061 50.5
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 1.0e-261 908.7 613 77.7
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 9.8e-225 785.8 1038 46.3
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.3e-218 764.6 946 47.5
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.7e-213 748.4 939 47.5
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.1e-199 702.6 620 62.1
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.3e-197 695.7 691 54.8
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.3e-195 689.1 695 53.4
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.0e-189 669.5 842 50.8
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 8.2e-179 633.3 907 43.0
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 2.0e-177 628.6 763 49.4
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.3e-171 609.4 384 76.6
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.9e-168 598.2 613 58.4
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.4e-167 595.9 724 47.7
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 4.6e-166 590.9 495 64.8
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 3.2e-151 541.6 493 60.2
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 3.9e-149 534.6 485 58.6
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 3.8e-144 518.1 489 58.5
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.9e-136 491.9 487 53.8
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.5e-121 441.4 555 47.6
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.3e-117 429.1 517 46.8
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 4.3e-111 408.3 264 74.6
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.0e-97 361.3 239 79.5
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 2.2e-91 342.8 350 52.6
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.9e-91 341.7 180 90.6
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.4e-85 323.6 204 82.4
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 8.4e-83 314.3 180 82.2
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 5.8e-76 291.6 207 69.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 9.9e-76 290.8 218 66.5
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 1.9e-74 286.6 151 93.4
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.7e-70 272.3 158 80.4
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.1e-63 250.8 329 45.3
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.3e-62 247.3 252 55.2
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.1e-58 234.2 334 42.2
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.6e-57 230.3 335 41.5
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.6e-57 230.3 248 50.4
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 6.7e-56 224.9 343 41.4
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.0e-51 208.8 337 38.3
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 1.2e-49 204.1 333 42.0
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 3.3e-47 196.1 133 75.9
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 1.5e-44 187.2 250 42.0
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 2.9e-43 183.0 107 87.9
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 4.2e-42 179.1 1894 22.0
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 6.3e-38 165.2 116 73.3
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.9e-34 153.7 116 72.4
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.3e-30 141.0 143 53.8
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.4e-29 137.5 142 47.2
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 2.7e-25 123.2 97 70.1
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 2.7e-25 123.2 97 70.1
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.7e-22 114.0 120 48.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 8.3e-22 111.7 96 61.5
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.0e-16 93.2 129 50.4
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 3.0e-16 93.2 79 64.6
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 4.0e-16 92.8 102 50.0
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 2.6e-15 90.1 120 47.5
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 4.8e-14 85.9 67 67.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 4.8e-14 85.9 67 67.2
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 6.3e-14 85.5 181 34.8
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 5.4e-13 82.4 45 88.9
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 7.7e-12 78.6 119 47.1
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.7e-11 77.4 88 45.5
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.9e-11 76.6 72 59.7
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 2.9e-11 76.6 53 67.9
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 3.8e-11 76.3 57 63.2
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 8.6e-11 75.1 235 31.1
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.1e-10 74.7 51 74.5
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.5e-10 73.6 73 56.2
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 5.5e-10 72.4 74 48.6
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.0e-08 68.2 48 68.8
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.6e-07 63.5 79 57.0
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.6e-07 63.5 96 43.8
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 9.8e-07 61.6 52 53.8
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 4.9e-06 59.3 104 40.4


User provided reference genes

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