Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 3.3e-286 987.6 484 100.0
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 5.6e-185 651.4 465 70.3
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 7.4e-137 491.5 446 57.4
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 4.5e-134 482.3 402 59.7
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 4.2e-132 475.7 464 54.1
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 3.6e-131 472.6 455 58.2
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 6.1e-131 471.9 409 57.9
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 2.3e-130 469.9 406 59.1
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 3.0e-130 469.5 394 61.2
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 5.7e-129 465.3 412 57.8
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.8e-128 462.2 467 53.3
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 6.3e-128 461.8 432 55.3
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.8e-127 460.3 383 60.6
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 3.1e-127 459.5 407 57.7
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 7.0e-127 458.4 479 50.9
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 2.0e-126 456.8 453 54.7
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.4e-126 456.1 467 52.9
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 3.4e-126 456.1 463 52.3
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.5e-126 455.7 483 51.6
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 4.5e-126 455.7 417 55.9
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 1.0e-125 454.5 407 56.3
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 2.2e-125 453.4 430 55.1
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 2.2e-125 453.4 458 53.9
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.9e-125 453.0 401 58.4
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.8e-125 452.6 460 51.5
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 5.0e-125 452.2 405 56.8
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 6.5e-125 451.8 455 52.7
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 6.5e-125 451.8 465 53.1
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.1e-124 451.1 407 57.7
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.9e-124 450.3 458 53.5
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.9e-124 450.3 541 47.3
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 7.2e-124 448.4 418 56.7
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 9.4e-124 448.0 421 55.6
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.4e-124 448.0 442 54.5
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 9.4e-124 448.0 448 54.5
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.6e-123 447.2 404 56.4
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.6e-123 447.2 414 56.3
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 2.1e-123 446.8 393 57.5
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.6e-123 446.0 468 51.9
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 8.0e-123 444.9 407 55.3
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.8e-122 443.7 401 56.9
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 2.3e-122 443.4 410 55.6
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.0e-122 443.0 436 53.2
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 2.0e-121 440.3 429 55.2
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 2.6e-121 439.9 472 51.9
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.3e-121 439.5 499 48.7
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 4.4e-121 439.1 502 49.0
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 5.7e-121 438.7 414 54.6
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 9.7e-121 438.0 452 51.8
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 9.7e-121 438.0 430 53.3
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 1.7e-120 437.2 437 52.6
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 4.8e-120 435.6 454 52.4
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 6.3e-120 435.3 418 54.1
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 8.2e-120 434.9 461 51.4
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 3.1e-119 433.0 442 52.9
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 7.0e-119 431.8 464 50.6
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 7.0e-119 431.8 403 55.3
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.1e-119 431.4 378 57.7
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 9.1e-119 431.4 404 55.0
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.6e-118 430.6 411 54.7
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 2.0e-118 430.3 308 65.6
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.6e-118 429.9 425 54.1
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 3.5e-118 429.5 401 54.9
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 5.9e-118 428.7 418 53.6
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 7.7e-118 428.3 452 53.1
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.0e-117 427.9 404 56.4
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.3e-117 427.6 459 50.3
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.2e-117 426.8 404 54.5
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.9e-117 426.4 404 54.5
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 3.8e-117 426.0 456 50.9
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 4.2e-116 422.5 474 50.0
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 4.2e-116 422.5 421 53.2
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 9.4e-116 421.4 405 54.6
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 9.4e-116 421.4 422 52.6
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 2.1e-115 420.2 412 53.2
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 3.6e-115 419.5 432 52.3
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 4.7e-115 419.1 465 50.1
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 4.0e-114 416.0 434 50.0
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 6.7e-114 415.2 443 50.8
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.0e-113 413.7 476 47.7
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 3.7e-112 409.5 459 49.9
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 6.3e-112 408.7 459 49.0
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 6.3e-112 408.7 454 50.4
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.1e-111 407.9 516 46.3
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.8e-111 407.1 461 48.8
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 4.1e-111 406.0 479 47.6
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 5.3e-111 405.6 466 49.1
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 9.1e-111 404.8 459 48.8
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 8.5e-109 398.3 458 49.1
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 8.5e-109 398.3 465 47.7
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 2.5e-108 396.7 453 50.1
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.2e-107 394.4 481 47.2
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.7e-107 393.3 461 49.0
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.6e-105 386.7 488 46.5
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 4.4e-105 386.0 401 52.1
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 3.7e-104 382.9 291 64.9
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 3.0e-98 363.2 307 60.3
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 4.4e-97 359.4 306 58.2
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 8.6e-93 345.1 269 63.9
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 2.9e-88 330.1 268 61.6
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.2e-86 324.7 361 49.9
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.3e-85 321.2 245 67.3
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.1e-82 311.6 245 62.9
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 2.6e-81 307.0 269 60.2
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.9e-80 303.5 404 43.6
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 4.9e-80 302.8 365 46.6
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 3.5e-78 296.6 464 40.9
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.9e-76 290.8 269 56.5
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 5.6e-76 289.3 364 41.8
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.3e-74 283.9 454 37.9
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.2e-73 281.6 421 38.0
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.3e-72 278.1 433 38.6
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 3.5e-70 270.0 400 43.5
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.1e-68 265.0 222 60.8
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 2.5e-68 263.8 295 48.1
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 7.3e-68 262.3 222 60.4
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.1e-66 258.5 243 57.2
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.6e-62 244.6 250 48.4
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.6e-57 225.7 179 64.2
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 5.4e-55 219.5 336 36.0
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.6e-54 218.0 380 38.9
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.7e-54 217.2 161 63.4
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 4.6e-54 216.5 167 66.5
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.7e-53 214.5 215 51.2
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.6e-51 208.0 245 46.5
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.9e-42 176.0 155 55.5
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 7.9e-38 162.5 142 62.0
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.4e-34 151.0 164 48.2
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 2.2e-32 144.4 203 44.3
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.5e-31 139.8 156 43.6
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 2.1e-30 137.9 102 62.7
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 2.3e-29 134.4 164 38.4
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 8.7e-29 132.5 85 77.6
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.3e-24 118.6 86 72.1
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.4e-21 108.6 87 62.1
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 4.2e-15 87.0 135 45.9
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.7e-11 75.1 133 39.1
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 3.1e-10 70.9 119 40.3
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.6e-09 67.8 71 46.5
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.0e-08 65.9 71 49.3
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.0e-08 65.9 150 35.3
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 8.5e-08 62.8 71 50.7
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 3.2e-07 60.8 72 38.9


User provided reference genes

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