Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 8.5e-134 481.9 699 100.0
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 7.5e-82 309.3 608 65.5
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 3.5e-47 194.1 690 73.3
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 2.6e-42 177.9 281 59.4
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 6.5e-25 120.2 106 52.8
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 4.2e-24 117.5 102 57.8
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 3.8e-17 94.4 91 48.4
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 4.7e-15 87.4 106 41.5
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 6.1e-15 87.0 91 46.2
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 6.1e-15 87.0 91 47.3
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 6.1e-15 87.0 107 43.9
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 7.9e-15 86.7 90 45.6
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.0e-14 86.3 91 47.3
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.8e-14 85.5 107 48.6
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 3.0e-14 84.7 99 44.4
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 6.7e-14 83.6 86 44.2
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.5e-13 82.4 91 46.2
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 2.6e-13 81.6 93 43.0
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 3.3e-13 81.3 106 38.7
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 3.3e-13 81.3 99 40.4
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 3.3e-13 81.3 93 43.0
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 4.4e-13 80.9 93 40.9
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 5.7e-13 80.5 109 44.0
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 5.7e-13 80.5 99 46.5
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 9.7e-13 79.7 92 43.5
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.3e-12 79.3 107 37.4
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.3e-12 79.3 99 39.4
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 1.7e-12 79.0 83 44.6
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 1.7e-12 79.0 85 47.1
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 1.7e-12 79.0 105 38.1
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.7e-12 79.0 91 44.0
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.8e-12 78.2 102 43.1
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.8e-12 78.2 81 44.4
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 3.7e-12 77.8 96 42.7
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 3.7e-12 77.8 82 47.6
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 3.7e-12 77.8 99 44.4
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 4.8e-12 77.4 96 41.7
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 4.8e-12 77.4 87 47.1
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 1.4e-11 75.9 103 41.7
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.4e-11 75.9 102 44.1
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.8e-11 75.5 90 41.1
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 3.1e-11 74.7 88 42.0
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 7.0e-11 73.6 91 42.9
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 7.0e-11 73.6 81 46.9
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 7.0e-11 73.6 82 45.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.0e-11 73.6 89 39.3
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 9.1e-11 73.2 88 42.0
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 1.2e-10 72.8 105 39.0
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.2e-10 72.8 82 42.7
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.2e-10 72.8 98 39.8
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.5e-10 72.4 91 38.5
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 2.0e-10 72.0 108 36.1
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 2.0e-10 72.0 108 37.0
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 2.0e-10 72.0 106 37.7
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 4.5e-10 70.9 90 38.9
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 4.5e-10 70.9 104 40.4
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 4.5e-10 70.9 98 35.7
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 4.5e-10 70.9 94 36.2
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 5.9e-10 70.5 107 38.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 5.9e-10 70.5 107 38.3
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 5.9e-10 70.5 107 38.3
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 5.9e-10 70.5 99 35.4
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 5.9e-10 70.5 93 36.6
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 1.0e-09 69.7 99 35.4
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 1.3e-09 69.3 87 39.1
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 2.2e-09 68.6 99 37.4
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 2.2e-09 68.6 81 42.0
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 2.9e-09 68.2 106 36.8
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.9e-09 68.2 110 33.6
SHI37769 Sapria himalayana HOM05D008459 ORTHO05D003903 2.9e-09 68.2 60 53.3
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 3.8e-09 67.8 102 39.2
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 5.0e-09 67.4 71 45.1
SHI48834 Sapria himalayana HOM05D008459 ORTHO05D003903 5.0e-09 67.4 63 52.4
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 6.5e-09 67.0 95 44.2
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 6.5e-09 67.0 73 46.6
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 8.5e-09 66.6 93 36.6
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.5e-09 66.6 93 36.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 8.5e-09 66.6 93 36.6
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.5e-09 66.6 93 36.6
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 8.5e-09 66.6 95 44.2
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.1e-08 66.2 104 37.5
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.5e-08 65.9 76 43.4
SHI49506 Sapria himalayana HOM05D008459 ORTHO05D003903 1.5e-08 65.9 65 50.8
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.5e-08 65.1 95 34.7
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 3.2e-08 64.7 108 31.5
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 3.2e-08 64.7 74 43.2
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 4.2e-08 64.3 104 34.6
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.2e-08 64.3 95 43.2
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 4.2e-08 64.3 95 43.2
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 4.2e-08 64.3 92 40.2
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 4.2e-08 64.3 93 36.6
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 5.5e-08 63.9 109 34.9
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 9.4e-08 63.2 93 35.5
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 1.6e-07 62.4 96 36.5
SHI50109 Sapria himalayana HOM05D008459 ORTHO05D003903 1.6e-07 62.4 63 46.0
SHI48935 Sapria himalayana HOM05D008459 ORTHO05D003903 2.1e-07 62.0 262 22.1
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 2.7e-07 61.6 100 36.0
SHI29688 Sapria himalayana HOM05D008459 ORTHO05D003903 2.7e-07 61.6 75 42.7
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 3.6e-07 61.2 106 34.9
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 3.6e-07 61.2 106 34.0
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 8.0e-07 60.1 86 34.9
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 1.0e-06 59.7 80 35.0
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 1.0e-06 59.7 92 39.1
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.4e-06 59.3 100 34.0
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.4e-06 59.3 105 36.2
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 1.8e-06 58.9 91 31.9
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 2.3e-06 58.5 87 32.2
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.3e-06 58.5 109 31.2
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 2.3e-06 58.5 85 41.2
SHI39069 Sapria himalayana HOM05D008459 ORTHO05D003903 2.3e-06 58.5 63 42.9
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 2.3e-06 58.5 91 36.3
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 3.0e-06 58.2 100 35.0
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.0e-06 58.2 95 35.8
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 3.0e-06 58.2 63 44.4
SHI39683 Sapria himalayana HOM05D008459 ORTHO05D003903 3.0e-06 58.2 57 49.1
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.9e-06 57.8 93 33.3
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.9e-06 57.8 92 38.0
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 3.9e-06 57.8 106 32.1
SHI42963 Sapria himalayana HOM05D008459 ORTHO05D003903 5.2e-06 57.4 63 42.9
SHI50267 Sapria himalayana HOM05D008459 ORTHO05D003903 5.2e-06 57.4 58 48.3
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 8.8e-06 56.6 71 40.8
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 8.8e-06 56.6 102 31.4


User provided reference genes

Program Settings