Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.3e-88 329.7 170 100.0
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.8e-83 312.0 170 92.9
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 4.1e-82 308.1 170 90.6
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.7e-73 278.9 169 80.5
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.3e-72 276.6 172 82.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 3.8e-72 275.0 171 81.9
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.8e-72 275.0 173 80.3
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.1e-71 273.5 172 78.5
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.1e-71 273.5 175 77.7
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.5e-71 272.3 175 77.1
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-71 271.9 173 79.2
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-71 271.9 173 79.2
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-71 271.9 173 79.2
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 4.2e-71 271.6 171 81.3
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.4e-71 270.4 172 79.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.2e-70 270.0 169 80.5
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.6e-70 269.6 172 77.9
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 8.0e-70 267.3 173 79.2
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 8.0e-70 267.3 172 77.3
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.0e-69 266.9 172 76.7
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.4e-69 266.5 181 75.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.4e-69 266.5 174 77.6
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.8e-69 266.2 178 78.1
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 2.3e-69 265.8 173 75.1
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.0e-69 265.0 174 76.4
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 5.2e-69 264.6 173 74.6
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 5.2e-69 264.6 171 77.2
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 8.8e-69 263.8 174 77.0
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.5e-68 263.1 175 77.1
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.4e-68 261.9 201 68.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.4e-68 261.9 201 68.7
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.4e-68 261.9 201 68.7
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 4.4e-68 261.5 174 77.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 5.7e-68 261.2 176 77.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 7.5e-68 260.8 173 76.3
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 9.8e-68 260.4 172 76.2
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.7e-67 259.6 165 77.6
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.2e-67 259.2 170 78.2
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 3.7e-67 258.5 171 74.9
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 3.7e-67 258.5 171 74.9
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.7e-67 258.5 172 76.7
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.7e-67 258.5 173 74.6
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.7e-67 258.5 173 75.1
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 4.8e-67 258.1 178 73.6
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 4.8e-67 258.1 168 74.4
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 6.3e-67 257.7 181 73.5
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 8.3e-67 257.3 173 75.7
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.1e-66 256.9 174 77.0
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 74.6
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.8e-66 256.1 175 73.1
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.8e-66 256.1 173 73.4
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.4e-66 255.8 174 74.1
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.4e-66 255.8 173 75.1
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 5.4e-66 254.6 171 73.1
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 7.0e-66 254.2 171 76.6
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 9.1e-66 253.8 169 74.0
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.6e-65 253.1 168 75.6
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.7e-65 252.3 171 72.5
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.7e-65 252.3 171 72.5
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.7e-65 252.3 171 72.5
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 74.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.3
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.9e-65 251.1 171 71.9
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 7.7e-65 250.8 173 71.7
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.3e-64 250.0 175 74.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.7e-64 249.6 171 71.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.7e-64 249.6 160 77.5
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.7e-64 249.6 173 71.1
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 2.2e-64 249.2 208 66.3
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.2e-64 249.2 159 76.1
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 2.2e-64 249.2 167 74.9
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.2e-64 249.2 196 68.4
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.9e-64 248.8 172 72.1
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 3.8e-64 248.4 171 71.3
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-64 248.4 171 71.3
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 3.8e-64 248.4 172 72.1
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.8e-64 248.4 159 75.5
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 5.0e-64 248.1 171 70.8
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 5.0e-64 248.1 159 76.1
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 6.5e-64 247.7 171 70.8
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 8.5e-64 247.3 171 70.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 8.5e-64 247.3 168 73.2
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.1e-63 246.9 159 76.1
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.1e-63 246.9 171 70.8
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.5e-63 246.5 171 71.9
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.5e-63 245.7 159 75.5
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 4.2e-63 245.0 175 73.7
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 9.5e-63 243.8 171 69.0
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 9.5e-63 243.8 170 70.6
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 9.5e-63 243.8 170 72.9
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.2e-62 243.4 164 72.6
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.2e-62 243.4 164 72.6
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.2e-62 243.4 164 72.6
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.7e-62 242.3 171 68.4
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 2.7e-62 242.3 157 75.8
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 3.6e-62 241.9 177 72.9
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 3.6e-62 241.9 172 70.9
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 4.7e-62 241.5 183 67.2
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.8e-61 239.6 173 68.2
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.5e-60 236.5 159 74.2
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.6e-60 235.7 174 67.2
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 9.8e-60 233.8 176 69.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.3e-59 233.4 219 62.1
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.7e-59 233.0 168 68.5
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.4e-58 229.9 167 67.7
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.4e-58 228.0 210 60.5
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.0e-58 227.6 139 79.1
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 3.5e-57 225.3 189 65.1
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 5.0e-56 221.5 167 65.3
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.2e-54 216.9 225 52.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 2.3e-53 212.6 171 62.0
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 4.0e-53 211.8 142 73.9
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 5.2e-53 211.5 263 47.9
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.8e-50 203.0 184 62.5
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.5e-49 198.7 120 80.8
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.9e-47 193.0 174 60.3
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.6e-46 189.9 172 61.0
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 4.0e-45 185.3 113 77.9
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 8.3e-43 177.6 168 56.5
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.4e-37 160.2 116 67.2
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.5e-36 156.8 96 81.2
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 4.1e-34 148.7 116 61.2
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 7.1e-34 147.9 107 70.1
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.5e-33 145.6 107 70.1
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.0e-32 144.1 119 64.7
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.3e-32 143.7 157 44.6
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.0e-32 142.5 109 66.1
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 3.9e-32 142.1 139 48.2
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.6e-32 141.4 116 66.4
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.1e-29 132.5 112 61.6
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 4.4e-28 128.6 103 64.1
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.4e-26 123.6 101 66.3
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 9.2e-26 120.9 81 69.1
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 9.2e-26 120.9 81 69.1
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.6e-24 114.4 110 55.5
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.5e-23 112.8 63 84.1
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.6e-22 109.0 82 70.7
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.1e-22 107.8 110 52.7
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.1e-21 105.9 64 81.2
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 8.9e-21 104.4 61 78.7
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.6e-20 102.8 106 41.5
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.3e-19 100.5 143 37.8
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.2e-19 99.8 72 65.3
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.9e-18 96.7 104 42.3
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.4e-18 96.3 65 70.8
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.7e-16 90.1 81 50.6
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 2.3e-16 89.7 106 41.5
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.8e-14 82.0 104 47.1
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.0e-13 79.0 50 74.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 5.3e-13 78.6 136 33.8
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 2.1e-06 56.6 28 96.4
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.1e-06 56.6 32 81.2


User provided reference genes

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