Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 0.0e+00 1206.8 613 100.0
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.3e-298 1029.2 613 84.8
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 3.0e-276 954.9 613 79.3
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.9e-239 832.0 619 68.5
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.8e-239 831.6 619 68.5
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 3.5e-224 781.9 632 65.0
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 5.9e-224 781.2 614 65.6
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 1.3e-218 763.5 619 63.3
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.9e-218 762.3 619 63.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 1.1e-217 760.4 619 63.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.1e-217 760.4 619 63.0
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.8e-217 759.6 619 62.4
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 1.6e-216 756.5 619 62.5
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.0e-215 753.8 624 61.4
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.9e-214 749.6 621 61.4
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 2.3e-212 742.7 619 61.9
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 9.8e-211 737.3 622 60.6
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 2.4e-209 732.6 619 61.4
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 1.2e-208 730.3 622 59.8
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.3e-207 726.1 619 59.6
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 3.0e-207 725.7 624 59.9
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 5.0e-207 724.9 618 59.7
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 9.5e-206 720.7 626 59.3
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 2.1e-205 719.5 622 59.8
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 6.2e-205 718.0 623 57.8
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 6.8e-204 714.5 617 61.1
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.2e-203 713.8 654 59.5
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 4.4e-203 711.8 624 58.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 2.9e-202 709.1 623 58.6
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.9e-202 709.1 619 60.1
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.1e-201 707.2 626 58.0
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 3.2e-201 705.7 623 57.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.5e-200 702.2 584 62.7
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.0e-199 700.7 623 57.8
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 8.6e-199 697.6 621 55.9
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.5e-198 696.8 624 57.7
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 4.3e-198 695.3 628 58.3
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 5.6e-198 694.9 621 58.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 3.6e-197 692.2 605 59.2
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 4.7e-197 691.8 623 58.1
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.0e-196 688.7 622 56.4
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 5.8e-195 684.9 629 55.8
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 5.8e-195 684.9 617 56.1
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 9.9e-195 684.1 628 56.2
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 3.7e-194 682.2 628 56.1
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 5.4e-193 678.3 625 55.0
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 5.4e-193 678.3 623 55.4
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.7e-192 676.0 619 57.4
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 8.6e-191 671.0 622 55.1
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.5e-190 670.2 627 55.0
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.5e-190 669.5 620 56.6
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 3.3e-190 669.1 622 54.8
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 2.1e-189 666.4 630 55.1
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 4.7e-189 665.2 620 54.0
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.4e-188 663.7 624 54.8
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.8e-188 663.3 626 55.8
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 2.4e-188 662.9 624 54.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.2e-188 661.8 626 53.7
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 8.9e-188 661.0 625 55.4
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 8.9e-188 661.0 628 54.1
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 2.0e-187 659.8 626 53.7
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 2.6e-187 659.4 655 53.1
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.8e-187 658.3 624 53.8
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.3e-186 657.1 621 55.4
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.9e-186 656.0 622 55.0
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 2.9e-186 656.0 627 53.3
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 4.9e-186 655.2 629 54.1
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 6.4e-186 654.8 621 55.2
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 6.4e-186 654.8 525 64.2
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 8.4e-186 654.4 626 54.5
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.4e-185 653.7 625 55.2
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 4.6e-184 648.7 624 53.7
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 7.8e-184 647.9 626 53.5
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.0e-183 646.0 619 55.4
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 1.1e-182 644.0 622 53.9
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 1.3e-181 640.6 622 53.9
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 8.1e-181 637.9 628 53.7
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.4e-180 636.3 617 53.0
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 5.3e-180 635.2 693 50.8
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.2e-179 634.0 636 51.3
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.5e-179 633.6 621 53.1
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 2.0e-179 633.3 622 53.4
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.6e-179 632.9 617 53.6
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.4e-179 632.5 659 51.0
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 4.4e-179 632.1 623 53.3
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 9.9e-179 630.9 622 53.2
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.3e-178 630.6 621 53.0
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 2.2e-178 629.8 567 56.8
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.9e-178 629.4 626 53.2
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.1e-177 627.5 622 53.2
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 2.1e-176 623.2 529 58.8
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 6.6e-175 618.2 620 52.3
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.1e-172 610.9 619 54.1
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.7e-170 603.6 685 48.3
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 2.7e-168 596.3 620 51.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 7.9e-168 594.7 614 53.1
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.5e-166 590.5 632 49.2
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 2.5e-161 573.2 612 51.5
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.3e-149 534.3 624 46.0
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 8.2e-149 531.6 645 44.8
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 8.2e-149 531.6 645 44.8
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.0e-147 526.9 642 44.7
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 3.3e-142 509.6 627 45.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.4e-137 494.2 646 44.0
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.7e-134 482.3 626 44.1
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.4e-132 476.9 487 52.4
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 5.9e-131 472.2 626 41.5
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.5e-129 467.6 534 48.3
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.0e-127 461.5 619 43.1
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.2e-125 453.8 386 57.8
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.5e-121 441.0 405 59.5
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.2e-118 431.4 406 53.7
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.2e-113 412.1 408 55.6
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.5e-107 392.9 589 39.6
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.0e-106 391.7 490 44.3
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 6.4e-69 266.2 494 33.2
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.1e-65 255.4 440 37.0
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 6.2e-64 249.6 627 29.7
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 4.2e-60 236.9 271 49.4
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.6e-56 223.8 130 78.5
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 9.9e-54 215.7 248 44.8
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 6.7e-50 203.0 167 62.3
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.1e-47 195.7 379 34.0
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 1.1e-44 185.7 214 45.8
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 4.6e-43 180.3 162 58.6
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.8e-42 178.3 161 60.2
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 4.2e-36 157.1 143 54.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.1e-33 149.1 626 25.2
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.5e-30 138.7 153 51.0
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 5.5e-28 130.2 103 64.1
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 2.4e-23 114.8 67 83.6
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 5.9e-22 110.2 69 79.7
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 3.2e-20 104.4 163 40.5
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 3.2e-20 104.4 67 79.1
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 7.2e-20 103.2 95 57.9
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.2e-18 97.1 150 39.3
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 9.7e-17 92.8 127 43.3
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.1e-15 87.4 134 39.6
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 3.5e-14 84.3 79 53.2
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 2.2e-13 81.6 52 76.9
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.6e-11 75.5 77 49.4
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 4.7e-11 73.9 123 39.0
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 2.2e-08 65.1 67 49.3
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 4.8e-08 63.9 34 82.4
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 1.1e-07 62.8 65 47.7
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 1.4e-07 62.4 45 68.9
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 3.1e-07 61.2 53 58.5
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 4.1e-07 60.8 43 65.1
Lsat_1_v5_gn_4_100620 Lactuca sativa HOM05D001733 ORTHO05D001882 5.9e-06 57.0 38 73.7


User provided reference genes

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