Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 3.8e-188 661.4 337 100.0
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 1.5e-120 436.8 312 76.3
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 2.0e-117 426.4 325 72.3
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 4.2e-115 418.7 304 74.7
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 5.6e-115 418.3 228 93.4
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 5.2e-113 411.8 277 77.6
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 8.9e-113 411.0 304 72.4
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 1.5e-112 410.2 287 75.6
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 1.3e-111 407.1 284 75.7
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 2.9e-111 406.0 257 82.1
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 8.3e-111 404.4 274 75.5
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 4.1e-110 402.1 255 80.8
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 9.2e-110 401.0 286 75.5
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 9.2e-110 401.0 286 75.5
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.6e-109 400.2 302 71.5
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 1.6e-109 400.2 259 80.7
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 1.6e-109 400.2 307 70.0
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 3.5e-109 399.1 247 82.2
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 4.6e-109 398.7 285 74.7
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 7.8e-109 397.9 285 74.4
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 1.0e-108 397.5 257 79.4
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 2.3e-108 396.4 258 78.7
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 2.9e-108 396.0 247 81.0
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 6.6e-108 394.8 258 78.3
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 3.3e-107 392.5 254 81.1
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 4.3e-107 392.1 243 81.1
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 4.3e-107 392.1 296 71.3
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 5.6e-107 391.7 258 78.3
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 7.3e-107 391.3 228 86.4
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 9.5e-107 391.0 288 72.9
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.2e-106 390.6 280 75.0
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 1.6e-106 390.2 239 84.1
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 4.7e-106 388.7 233 83.7
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 6.2e-106 388.3 303 68.6
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 6.2e-106 388.3 274 74.8
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 8.0e-106 387.9 273 73.6
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 1.0e-105 387.5 261 75.1
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.4e-105 387.1 292 71.2
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 1.8e-105 386.7 246 80.1
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 2.3e-105 386.3 232 84.9
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 4.0e-105 385.6 252 78.2
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 5.2e-105 385.2 291 70.1
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 8.9e-105 384.4 232 83.2
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 1.2e-104 384.0 249 77.5
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.2e-104 384.0 230 83.9
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 1.2e-104 384.0 255 78.0
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 2.0e-104 383.3 230 84.3
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 2.0e-104 383.3 234 82.5
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.4e-104 382.1 268 74.3
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 7.5e-104 381.3 230 82.2
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 7.5e-104 381.3 288 71.2
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.7e-103 380.2 252 78.6
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.7e-103 380.2 230 81.3
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.7e-103 380.2 271 73.8
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 3.7e-103 379.0 254 73.6
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 8.3e-103 377.9 255 76.5
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 1.1e-102 377.5 298 68.1
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.4e-102 377.1 226 82.3
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 2.4e-102 376.3 285 70.5
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 2.4e-102 376.3 255 76.9
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 9.2e-102 374.4 264 75.4
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 9.2e-102 374.4 267 73.8
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 1.2e-101 374.0 282 70.2
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 1.6e-101 373.6 282 69.9
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.6e-101 373.6 247 77.7
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 2.0e-101 373.2 247 77.7
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.0e-101 373.2 227 82.8
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 2.7e-101 372.9 259 74.9
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.7e-101 372.9 275 72.4
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 4.6e-101 372.1 247 77.3
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 2.3e-100 369.8 298 67.8
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 3.0e-100 369.4 246 76.8
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 3.9e-100 369.0 292 67.8
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.9e-100 369.0 293 66.6
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 3.6e-98 362.5 207 87.0
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 4.7e-98 362.1 294 66.7
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 4.7e-98 362.1 277 69.0
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 8.9e-97 357.8 247 73.7
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.0e-96 356.7 228 78.1
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 5.8e-96 355.1 207 85.5
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 7.5e-96 354.8 222 79.3
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.7e-95 353.6 216 81.5
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 4.9e-95 352.1 258 72.5
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 1.1e-94 350.9 261 69.3
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.9e-94 350.1 298 65.4
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 1.9e-94 350.1 357 58.0
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 9.2e-94 347.8 226 76.5
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 7.8e-93 344.7 238 75.6
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 1.5e-91 340.5 249 72.3
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 2.5e-91 339.7 270 67.4
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 4.3e-91 339.0 313 61.0
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.3e-89 333.2 244 72.1
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 5.2e-89 332.0 268 68.7
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 8.9e-89 331.3 227 72.7
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 2.2e-87 326.6 321 57.3
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 3.7e-87 325.9 290 65.9
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.1e-86 324.3 226 73.0
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 5.4e-86 322.0 235 73.2
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.7e-85 319.7 230 69.6
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 3.5e-85 319.3 193 82.4
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 4.0e-81 305.8 287 63.4
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 4.4e-80 302.4 202 74.8
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 6.4e-79 298.5 227 70.0
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 8.4e-79 298.1 207 73.4
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 6.6e-76 288.5 212 73.6
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 4.8e-74 282.3 227 68.7
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 8.1e-74 281.6 261 58.6
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.4e-70 270.0 172 76.7
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 3.2e-70 269.6 297 51.5
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 2.4e-65 253.4 198 66.2
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 9.3e-62 241.5 206 63.1
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.3e-55 221.1 176 68.2
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 8.4e-55 218.4 213 52.1
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 4.2e-46 189.5 104 90.4
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 2.8e-42 176.8 162 61.7
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.1e-41 174.9 162 58.6
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.6e-40 170.2 130 68.5
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.5e-38 163.7 168 57.7
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 1.0e-28 131.7 279 38.4
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.8e-25 120.9 258 39.9
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 4.5e-24 116.3 193 42.5
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 2.9e-23 113.6 236 38.6
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 9.4e-22 108.6 115 56.5
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 9.4e-22 108.6 63 84.1
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.3e-20 104.0 66 72.7
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 3.3e-19 100.1 144 47.2
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 4.1e-17 93.2 219 30.6
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 5.3e-17 92.8 233 30.0
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 4.5e-16 89.7 56 73.2
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 4.5e-16 89.7 48 85.4
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 2.7e-13 80.5 104 51.9
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 1.2e-08 65.1 61 63.9


User provided reference genes

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