Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 7.0e-120 434.1 241 100.0
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.4e-88 329.3 241 73.9
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 9.2e-80 300.8 240 69.6
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 2.4e-75 286.2 241 68.0
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.9e-73 279.3 243 63.4
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.2e-72 275.8 245 61.2
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 7.1e-72 274.6 242 63.2
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.1e-71 273.1 239 63.6
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.8e-71 271.2 242 63.2
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.0e-70 270.8 244 65.2
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.7e-70 270.0 242 59.9
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.3e-70 269.6 242 61.2
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.0e-70 269.2 242 59.9
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.9e-70 268.9 245 62.4
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.6e-70 268.1 244 59.4
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 8.7e-70 267.7 243 61.7
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.9e-69 266.5 243 61.3
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 5.6e-69 265.0 241 60.2
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 5.6e-69 265.0 243 62.1
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.3e-68 263.8 241 60.6
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.3e-68 263.8 241 59.3
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.3e-68 263.8 242 61.2
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.1e-68 263.1 234 62.4
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.1e-68 263.1 241 63.5
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 2.1e-68 263.1 241 59.8
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 3.6e-68 262.3 245 60.4
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.6e-68 262.3 242 59.5
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 4.8e-68 261.9 241 60.6
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 6.2e-68 261.5 241 59.3
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.1e-67 260.8 245 60.0
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.1e-67 260.8 244 61.1
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.1e-67 260.8 241 59.8
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-67 260.4 242 62.8
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.4e-67 260.4 242 62.4
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 2.4e-67 259.6 234 60.7
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.1e-67 259.2 242 59.9
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 4.0e-67 258.8 245 60.0
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 5.3e-67 258.5 242 59.9
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 6.9e-67 258.1 242 62.8
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.2e-66 257.3 242 63.6
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.2e-66 257.3 243 58.0
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.5e-66 256.9 241 62.2
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.5e-66 256.9 243 58.4
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.0e-66 256.5 238 63.9
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.0e-66 256.5 242 59.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.4e-66 255.4 241 59.3
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 4.4e-66 255.4 241 58.5
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 5.8e-66 255.0 241 60.6
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 5.8e-66 255.0 242 61.6
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 7.6e-66 254.6 229 62.0
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 9.9e-66 254.2 243 58.0
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 9.9e-66 254.2 245 58.4
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.7e-65 253.4 243 58.8
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 2.2e-65 253.1 229 62.0
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.9e-65 252.7 245 58.4
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 4.9e-65 251.9 242 55.8
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 6.4e-65 251.5 244 60.2
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 6.4e-65 251.5 275 54.9
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 8.4e-65 251.1 242 57.4
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.4e-65 251.1 243 61.3
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.1e-64 250.8 225 60.9
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.4e-64 250.4 243 57.6
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 1.4e-64 250.4 265 54.7
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.4e-64 249.6 277 54.9
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.4e-64 249.6 242 57.4
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.2e-64 249.2 245 57.6
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.2e-64 249.2 243 60.9
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.2e-64 248.8 243 60.9
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 5.4e-64 248.4 240 57.1
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 7.1e-64 248.1 243 57.6
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 7.1e-64 248.1 242 59.5
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 9.3e-64 247.7 242 57.4
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 9.3e-64 247.7 241 58.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.2e-63 247.3 234 59.8
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.2e-63 247.3 242 57.9
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.1e-63 246.5 242 58.7
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.7e-63 246.1 242 56.2
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.5e-63 245.7 232 59.1
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 4.6e-63 245.4 251 58.6
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.6e-62 241.5 244 57.0
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 8.7e-62 241.1 242 55.8
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.9e-61 240.0 239 54.8
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 2.5e-61 239.6 240 55.4
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.5e-61 239.6 229 60.3
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.5e-61 239.6 242 59.1
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 4.3e-61 238.8 242 56.2
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 4.3e-61 238.8 240 56.2
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 5.6e-61 238.4 242 55.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 7.4e-61 238.0 242 55.4
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 9.6e-61 237.7 241 56.8
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 9.6e-61 237.7 241 56.8
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.8e-60 236.1 240 57.5
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.8e-60 236.1 278 52.2
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 4.8e-60 235.3 243 54.7
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 4.8e-60 235.3 236 58.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 6.2e-60 235.0 210 64.8
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 8.1e-60 234.6 227 59.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 8.1e-60 234.6 278 51.8
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.1e-59 234.2 245 56.7
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.1e-59 234.2 243 55.1
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.4e-59 233.8 248 55.6
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.8e-59 233.4 242 55.4
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.3e-59 231.9 241 53.9
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 9.0e-59 231.1 194 65.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 2.0e-58 229.9 227 56.8
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 2.0e-58 229.9 234 53.8
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 7.6e-58 228.0 241 55.2
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 9.9e-58 227.6 185 67.0
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 2.2e-57 226.5 232 54.7
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 3.8e-57 225.7 232 54.7
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 3.8e-57 225.7 232 54.7
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 4.9e-57 225.3 176 68.2
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.9e-57 225.3 248 51.2
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 1.9e-56 223.4 232 54.7
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 1.9e-56 223.4 232 54.7
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 2.4e-56 223.0 200 60.5
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.6e-55 220.3 249 53.8
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 6.7e-54 214.9 188 61.7
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 2.8e-52 209.5 176 63.1
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 8.1e-52 208.0 234 53.0
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.6e-50 201.4 248 48.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.7e-49 200.3 234 52.6
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 3.9e-46 189.1 121 74.4
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 8.7e-46 188.0 169 60.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.5e-45 187.2 254 50.4
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 4.8e-44 182.2 170 59.4
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 8.2e-44 181.4 240 45.0
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.2e-42 177.6 245 44.1
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.0e-42 176.8 241 42.7
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 4.5e-42 175.6 128 68.8
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.3e-41 174.1 244 44.3
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.2e-39 167.5 124 64.5
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 2.0e-34 150.2 244 37.7
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.8e-33 146.0 120 67.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 7.2e-32 141.7 238 36.6
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.7e-30 135.2 138 54.3
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.5e-29 134.0 183 46.4
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.2e-28 130.2 80 75.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.2e-28 128.3 117 60.7
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-27 127.9 117 60.7
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 5.3e-27 125.6 116 60.3
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.2e-26 124.4 156 50.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.4e-24 117.5 89 67.4
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.6e-18 96.7 119 47.1
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 3.5e-18 96.3 125 48.0
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 3.5e-18 96.3 125 48.0
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 3.5e-18 96.3 125 48.0
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.5e-16 90.9 93 61.3
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 5.7e-13 79.0 194 33.0
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.1e-11 74.7 252 28.2
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 2.4e-11 73.6 102 43.1
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 5.3e-11 72.4 105 46.7
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 5.9e-10 68.9 44 70.5
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 7.7e-10 68.6 57 64.9
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 8.5e-09 65.1 35 85.7
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 8.0e-07 58.5 140 29.3
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 1.0e-06 58.2 116 36.2
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.4e-06 57.8 166 27.7
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.8e-06 57.4 91 35.2
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.8e-06 57.4 78 43.6
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 3.0e-06 56.6 90 34.4
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 3.0e-06 56.6 91 34.1
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 4.0e-06 56.2 130 26.9
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 6.8e-06 55.5 135 27.4
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 6.8e-06 55.5 148 27.7


User provided reference genes

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