Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 1.0e-51 206.5 106 100.0
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 1.2e-39 166.4 107 81.3
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 6.6e-38 160.6 98 82.7
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 4.6e-23 111.3 106 56.6
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.0e-22 110.2 100 60.0
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 8.6e-22 107.1 100 58.0
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 8.6e-22 107.1 105 57.1
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 1.5e-21 106.3 100 58.0
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 1.9e-21 105.9 100 55.0
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 3.3e-21 105.1 100 54.0
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 4.3e-21 104.8 100 52.0
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 4.3e-21 104.8 106 56.6
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 5.6e-21 104.4 112 53.6
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 7.3e-21 104.0 100 57.0
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 9.5e-21 103.6 100 53.0
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 1.2e-20 103.2 100 53.0
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 1.6e-20 102.8 100 57.0
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 1.6e-20 102.8 112 53.6
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 1.6e-20 102.8 100 57.0
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 2.1e-20 102.4 106 53.8
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 2.8e-20 102.1 106 54.7
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 3.6e-20 101.7 111 53.2
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 6.2e-20 100.9 105 54.3
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 6.2e-20 100.9 100 53.0
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 6.2e-20 100.9 105 53.3
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 8.1e-20 100.5 100 54.0
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 1.1e-19 100.1 106 52.8
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 1.1e-19 100.1 106 53.8
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 1.8e-19 99.4 106 48.1
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 1.8e-19 99.4 107 51.4
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 2.3e-19 99.0 100 53.0
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 3.1e-19 98.6 107 50.5
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 3.1e-19 98.6 105 50.5
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 4.0e-19 98.2 100 53.0
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 5.2e-19 97.8 100 54.0
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 5.2e-19 97.8 101 53.5
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 6.8e-19 97.4 102 58.8
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 8.9e-19 97.1 101 52.5
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 8.9e-19 97.1 99 53.5
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.5e-18 96.3 100 53.0
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.0e-18 95.9 107 53.3
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 2.0e-18 95.9 107 53.3
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 2.0e-18 95.9 100 57.0
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 2.6e-18 95.5 104 48.1
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 3.4e-18 95.1 103 48.5
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 4.4e-18 94.7 104 47.1
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 4.4e-18 94.7 100 50.0
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 4.4e-18 94.7 100 53.0
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 4.4e-18 94.7 105 52.4
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 5.8e-18 94.4 100 55.0
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 5.8e-18 94.4 100 50.0
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 5.8e-18 94.4 103 47.6
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 7.5e-18 94.0 100 51.0
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 9.8e-18 93.6 80 65.0
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 9.8e-18 93.6 100 53.0
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 1.3e-17 93.2 100 51.0
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 1.3e-17 93.2 107 52.3
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 2.2e-17 92.4 100 51.0
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 3.7e-17 91.7 100 51.0
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 4.9e-17 91.3 101 56.4
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 4.9e-17 91.3 80 63.8
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 4.9e-17 91.3 100 52.0
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 4.9e-17 91.3 100 49.0
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 6.4e-17 90.9 99 49.5
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 6.4e-17 90.9 104 47.1
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 6.4e-17 90.9 105 52.4
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 1.1e-16 90.1 100 50.0
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 1.4e-16 89.7 103 51.5
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.4e-16 89.7 103 51.5
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.4e-16 89.7 102 50.0
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.9e-16 89.4 101 56.4
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 1.9e-16 89.4 101 52.5
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 3.2e-16 88.6 103 50.5
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 3.2e-16 88.6 88 53.4
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 5.4e-16 87.8 102 49.0
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 7.1e-16 87.4 102 49.0
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 7.1e-16 87.4 100 51.0
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 9.2e-16 87.0 83 60.2
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.2e-15 86.7 101 52.5
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 1.2e-15 86.7 103 49.5
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 1.2e-15 86.7 102 51.0
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.6e-15 86.3 83 59.0
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.1e-15 85.9 80 56.2
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 2.1e-15 85.9 107 46.7
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 2.1e-15 85.9 92 50.0
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.7e-15 85.5 122 45.9
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 2.7e-15 85.5 100 49.0
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 3.5e-15 85.1 86 55.8
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.5e-15 85.1 102 49.0
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 4.6e-15 84.7 101 52.5
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 4.6e-15 84.7 100 47.0
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 4.6e-15 84.7 100 47.0
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 4.6e-15 84.7 49 81.6
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 6.0e-15 84.3 100 44.0
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 1.7e-14 82.8 105 44.8
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.7e-14 82.8 51 80.4
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 1.7e-14 82.8 107 49.5
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 1.7e-14 82.8 107 45.8
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 2.3e-14 82.4 100 45.0
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.3e-14 82.4 60 68.3
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 3.0e-14 82.0 100 46.0
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 3.0e-14 82.0 106 43.4
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 3.9e-14 81.6 44 86.4
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 3.9e-14 81.6 100 46.0
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 8.6e-14 80.5 83 59.0
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 8.6e-14 80.5 63 68.3
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 8.6e-14 80.5 100 45.0
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 1.5e-13 79.7 100 42.0
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 2.5e-13 79.0 100 42.0
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 2.5e-13 79.0 49 77.6
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.2e-12 76.6 46 73.9
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 2.8e-12 75.5 65 53.8
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 5.2e-11 71.2 92 43.5
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 9.9e-10 67.0 100 39.0
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.3e-09 66.6 41 73.2
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.3e-09 66.6 41 73.2
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 1.3e-09 66.6 41 73.2
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 1.3e-09 66.6 43 67.4
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 2.2e-09 65.9 90 41.1
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 3.8e-09 65.1 43 65.1
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 4.9e-09 64.7 43 65.1
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 1.9e-08 62.8 43 58.1
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 5.4e-08 61.2 75 44.0
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 2.1e-07 59.3 43 62.8
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 2.1e-07 59.3 43 62.8
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 3.5e-07 58.5 38 65.8
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 3.5e-07 58.5 38 65.8
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 6.0e-07 57.8 39 64.1
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.0e-06 57.0 41 58.5
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 1.7e-06 56.2 48 56.2
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 1.7e-06 56.2 38 63.2
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 1.7e-06 56.2 38 65.8
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 2.3e-06 55.8 38 65.8
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 8.6e-06 53.9 36 66.7


User provided reference genes

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