Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 0.0e+00 1347.4 632 100.0
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 3.9e-239 831.6 436 86.7
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 1.1e-233 813.5 448 82.6
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 8.8e-223 777.3 451 78.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.4e-220 770.0 449 78.6
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 5.0e-218 761.5 484 73.6
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.9e-217 759.6 452 76.5
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.9e-217 759.6 452 76.5
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.5e-217 759.2 451 75.4
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 7.2e-217 757.7 477 72.5
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.2e-217 757.7 456 75.2
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 2.8e-216 755.7 451 74.9
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 4.0e-215 751.9 444 75.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.0e-215 751.9 449 75.5
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 3.4e-214 748.8 471 73.2
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.4e-214 748.4 449 75.1
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 4.4e-214 748.4 471 73.9
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.2e-213 746.1 473 72.3
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.8e-213 745.7 437 76.0
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 4.9e-213 745.0 460 73.9
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 6.3e-213 744.6 469 72.1
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.8e-212 743.0 475 72.4
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.4e-212 742.7 436 76.1
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 4.1e-212 741.9 453 73.3
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 4.1e-212 741.9 478 72.4
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 9.2e-212 740.7 464 72.4
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 9.2e-212 740.7 452 73.9
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.2e-211 740.3 438 75.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.0e-211 739.6 475 71.8
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 2.7e-211 739.2 451 73.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.5e-211 738.8 456 73.9
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.9e-211 738.0 474 71.7
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.8e-211 737.6 482 71.4
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.9e-210 735.7 444 74.8
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.9e-210 735.7 451 74.5
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 5.0e-210 734.9 494 68.8
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 6.6e-210 734.6 453 72.0
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.6e-210 734.2 451 74.3
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-209 733.8 474 72.2
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.5e-209 733.4 452 73.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 2.5e-209 732.6 453 73.5
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.3e-209 732.3 479 69.5
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 3.3e-209 732.3 427 75.9
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 7.3e-209 731.1 449 74.2
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 7.3e-209 731.1 427 76.1
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 7.3e-209 731.1 427 75.9
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.6e-208 729.9 457 72.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 8.0e-208 727.6 423 77.3
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 8.0e-208 727.6 468 72.4
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.4e-207 726.9 471 70.7
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 2.3e-207 726.1 480 69.0
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 3.0e-207 725.7 467 73.0
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 4.0e-207 725.3 448 73.4
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 5.2e-207 724.9 424 76.2
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.0e-206 723.0 469 69.1
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 2.0e-206 723.0 448 73.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.4e-206 721.8 441 74.4
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 4.4e-206 721.8 440 73.2
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 4.4e-206 721.8 456 72.6
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 5.7e-206 721.5 469 70.1
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 2.2e-205 719.5 463 71.3
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 3.7e-205 718.8 430 75.1
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 4.9e-205 718.4 427 75.2
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.8e-204 716.5 438 73.3
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 7.0e-204 714.5 454 71.8
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.3e-202 710.3 474 68.4
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 1.7e-202 709.9 456 70.6
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 3.0e-202 709.1 451 70.5
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 8.6e-202 707.6 452 71.0
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 8.6e-202 707.6 466 70.8
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 8.6e-202 707.6 466 70.6
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 7.3e-201 704.5 451 71.0
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 9.5e-201 704.1 425 73.6
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.2e-200 703.7 454 70.0
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.2e-200 703.7 454 70.0
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.6e-200 703.4 451 70.1
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 3.6e-200 702.2 474 68.8
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 3.6e-200 702.2 423 73.8
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 8.0e-200 701.0 455 69.9
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 8.0e-200 701.0 455 69.9
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 4.0e-199 698.7 451 70.3
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.6e-198 696.0 456 70.2
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.7e-197 693.3 449 69.7
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 3.7e-197 692.2 450 70.2
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.9e-197 691.8 488 67.4
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.0e-196 688.0 446 68.6
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.0e-195 686.4 474 67.7
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.0e-194 684.1 459 70.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.3e-194 683.7 457 72.0
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 5.6e-193 678.3 428 70.1
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.7e-192 675.2 511 63.8
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.9e-191 671.0 467 64.5
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 6.6e-186 654.8 461 64.0
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 3.3e-185 652.5 568 56.0
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 8.9e-183 644.4 411 72.7
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 2.2e-181 639.8 378 75.1
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 3.5e-179 632.5 380 74.7
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 3.5e-179 632.5 380 74.7
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 3.9e-178 629.0 451 65.0
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 3.9e-178 629.0 442 66.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 9.6e-177 624.4 457 65.2
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 3.5e-171 605.9 380 73.2
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 3.0e-170 602.8 367 73.0
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.9e-170 602.4 359 75.8
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 5.3e-167 592.0 427 64.2
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.6e-166 589.7 427 63.9
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.4e-164 583.9 417 62.8
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.5e-163 579.3 430 64.7
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.5e-161 573.9 426 60.3
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.3e-160 570.9 325 76.6
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.1e-160 570.1 433 63.7
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 7.6e-158 561.6 518 55.0
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.6e-155 553.9 467 56.5
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.9e-148 530.4 452 55.5
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 9.0e-143 511.5 396 57.3
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 3.8e-141 506.1 431 58.9
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 3.9e-138 496.1 321 68.8
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 2.2e-133 480.3 270 77.4
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 5.5e-132 475.7 419 53.5
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.7e-120 437.6 251 78.1
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 9.1e-103 378.6 218 77.5
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 2.9e-101 373.6 454 42.1
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.2e-83 312.8 183 76.0
ECA247G2257 Erigeron canadensis HOM05D010915 ORTHO05D010404 1.2e-78 298.5 180 80.0
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.4e-74 285.0 162 77.8
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.2e-67 261.9 426 38.3
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.8e-65 253.1 370 38.6
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.2e-64 251.1 148 73.6
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.9e-58 229.6 158 69.0
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.9e-56 224.2 166 62.7
ECA247G0511 Erigeron canadensis HOM05D010915 ORTHO05D010404 4.6e-54 216.9 144 73.6
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.8e-54 216.1 111 82.9
ECA234G3585 Erigeron canadensis HOM05D010915 ORTHO05D010404 9.6e-52 209.1 164 60.4
ECA238G1550 Erigeron canadensis HOM05D010915 ORTHO05D010404 1.1e-50 205.7 164 59.8
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.1e-47 193.0 148 55.4
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.6e-44 182.6 118 70.3
ECA238G1144 Erigeron canadensis HOM05D010915 ORTHO05D010404 7.1e-39 166.4 108 74.1
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.3e-39 166.0 132 58.3
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 8.7e-37 159.5 109 65.1
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 4.0e-34 150.6 184 44.0
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.9e-28 131.7 178 42.7
ECA240G4572 Erigeron canadensis HOM05D010915 ORTHO05D010404 4.3e-28 130.6 162 42.0
ECA234G3351 Erigeron canadensis HOM05D010915 ORTHO05D010404 3.0e-21 107.8 87 58.6
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.4e-17 94.4 61 67.2
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.2e-15 87.8 60 58.3
ECA234G1148 Erigeron canadensis HOM05D010915 ORTHO05D010404 5.5e-15 87.0 111 43.2
ECA234G3300 Erigeron canadensis HOM05D010915 ORTHO05D010404 9.4e-15 86.3 111 41.4
ECA246G1308 Erigeron canadensis HOM05D010915 ORTHO05D010404 2.7e-14 84.7 48 85.4
Lsat_1_v5_gn_4_99201 Lactuca sativa HOM05D009439 ORTHO05D010827 1.0e-13 82.8 153 33.3
HanXRQChr04g0099511 Helianthus annuus HOM05D010915 ORTHO05D010404 2.3e-13 81.6 167 36.5
HanXRQChr04g0099521 Helianthus annuus HOM05D010915 ORTHO05D010404 2.8e-11 74.7 164 34.8
HanXRQChr04g0099531 Helianthus annuus HOM05D010915 ORTHO05D010404 1.4e-10 72.4 149 32.9
Lsat_1_v5_gn_8_118360 Lactuca sativa HOM05D009439 ORTHO05D010404 1.8e-10 72.0 161 29.8
Lsat_1_v5_gn_6_59841 Lactuca sativa HOM05D009439 ORTHO05D010404 2.9e-08 64.7 166 28.3
HanXRQChr04g0099501 Helianthus annuus HOM05D010915 ORTHO05D010404 5.0e-08 63.9 154 31.2
Lsat_1_v5_gn_0_25881 Lactuca sativa HOM05D009439 ORTHO05D010404 5.0e-08 63.9 166 28.3
Lsat_1_v5_gn_2_108261 Lactuca sativa HOM05D009439 ORTHO05D010404 5.0e-08 63.9 166 28.3
Lsat_1_v5_gn_3_109740 Lactuca sativa HOM05D009439 ORTHO05D010404 5.0e-08 63.9 166 28.3
Lsat_1_v5_gn_5_133480 Lactuca sativa HOM05D009439 ORTHO05D010404 5.0e-08 63.9 166 28.3
Lsat_1_v5_gn_5_151300 Lactuca sativa HOM05D009439 ORTHO05D010404 5.0e-08 63.9 166 28.3
Lsat_1_v5_gn_7_108221 Lactuca sativa HOM05D009439 ORTHO05D010404 5.0e-08 63.9 166 28.3
Lsat_1_v5_gn_9_102201 Lactuca sativa HOM05D009439 ORTHO05D010404 5.0e-08 63.9 166 28.3
Lsat_1_v5_gn_1_106180 Lactuca sativa HOM05D009439 ORTHO05D010404 6.5e-08 63.5 166 28.3
Lsat_1_v5_gn_7_48561 Lactuca sativa HOM05D009439 ORTHO05D010404 6.5e-08 63.5 166 28.3
Lsat_1_v5_gn_9_95301 Lactuca sativa HOM05D009439 ORTHO05D010404 3.2e-07 61.2 166 27.7
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.2e-07 60.8 122 35.2
Lsat_1_v5_gn_4_80421 Lactuca sativa HOM05D009439 ORTHO05D010404 4.2e-07 60.8 166 27.7
Lsat_1_v5_gn_5_62540 Lactuca sativa HOM05D009439 ORTHO05D010404 2.7e-06 58.2 166 27.1


User provided reference genes

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