Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 0.0e+00 2165.6 1237 100.0
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 5.3e-264 915.2 1374 49.0
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.2e-226 791.2 1339 44.3
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 8.0e-111 406.4 1304 31.7
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 5.2e-102 377.1 1500 31.1
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.6e-95 354.4 1194 29.4
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.7e-92 345.5 1449 29.9
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 9.2e-91 339.7 822 33.2
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 6.0e-90 337.0 709 33.3
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.0e-89 336.3 1035 29.1
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 2.5e-88 331.6 1503 29.9
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.4e-86 325.9 1457 30.3
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.0e-86 324.3 1429 31.5
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 5.2e-86 323.9 693 33.8
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 6.8e-86 323.6 1692 27.4
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 3.4e-85 321.2 799 31.7
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 4.4e-85 320.9 1520 27.4
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.7e-84 317.8 1209 27.1
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 5.4e-83 313.9 1533 27.8
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.5e-80 305.8 949 28.9
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.9e-80 305.4 944 29.3
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 2.5e-80 305.1 786 31.4
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 2.8e-79 301.6 947 29.4
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.7e-79 300.8 843 29.7
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.8e-78 298.9 1224 29.9
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.1e-78 298.1 944 28.8
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.1e-78 298.1 1094 27.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 4.0e-78 297.7 1514 27.9
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 2.6e-77 295.0 837 28.9
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.7e-76 292.4 1474 28.8
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.9e-76 290.8 1095 26.7
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.9e-75 288.9 1095 26.8
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.4e-75 288.5 1056 27.5
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 3.2e-75 288.1 1404 31.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 7.1e-75 287.0 1577 30.9
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.1e-75 287.0 1433 29.7
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 9.3e-75 286.6 1943 24.1
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.2e-74 286.2 682 32.0
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 2.7e-74 285.0 1230 26.0
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.0e-73 283.1 1104 27.3
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.5e-72 278.5 1451 26.9
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 4.3e-72 277.7 753 31.5
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 5.6e-72 277.3 1689 25.5
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.3e-72 276.9 1161 26.0
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.3e-71 276.2 1371 26.5
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 2.1e-71 275.4 1428 29.6
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.2e-71 273.9 1553 29.3
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.4e-70 272.7 797 28.0
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 2.4e-70 271.9 1357 27.3
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 3.4e-69 268.1 1072 27.5
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 7.6e-69 266.9 1382 27.7
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 7.6e-69 266.9 833 27.6
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.7e-68 265.8 1382 27.6
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.7e-68 265.8 1320 27.1
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.2e-68 265.4 1374 27.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.9e-68 265.0 956 26.5
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 4.9e-68 264.2 1378 27.2
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.1e-67 263.1 729 32.6
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.7e-65 255.8 692 30.1
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 6.6e-65 253.8 660 30.6
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 6.6e-65 253.8 1402 26.4
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 2.5e-64 251.9 1530 27.1
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 3.3e-64 251.5 1409 25.6
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 1.3e-63 249.6 1015 26.7
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.6e-63 249.2 976 26.6
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.1e-62 246.5 1539 26.4
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.8e-62 245.7 981 26.0
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 2.4e-62 245.4 619 30.0
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 4.0e-62 244.6 1339 27.9
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 7.6e-61 240.4 1519 25.4
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 9.9e-61 240.0 1079 25.9
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.3e-60 239.6 1011 27.0
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 2.2e-60 238.8 721 28.2
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 8.4e-60 236.9 973 26.3
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.1e-59 236.5 950 25.6
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.9e-59 235.7 960 26.7
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 7.1e-59 233.8 1116 24.7
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.3e-57 229.6 1134 24.4
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 2.5e-56 225.3 1516 24.3
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.3e-56 224.9 601 31.4
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 3.3e-56 224.9 1347 23.6
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 4.3e-56 224.6 606 31.2
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 7.4e-56 223.8 1148 24.1
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 9.6e-56 223.4 960 25.3
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 9.6e-56 223.4 646 26.6
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.3e-55 223.0 651 27.2
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.6e-55 222.6 1467 26.3
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.1e-54 219.9 628 28.5
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 1.4e-54 219.5 1411 29.3
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 6.9e-54 217.2 647 27.0
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.2e-53 216.5 883 27.0
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 5.8e-53 214.2 614 28.8
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 4.9e-52 211.1 1143 24.4
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 2.5e-51 208.8 652 27.6
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 4.2e-51 208.0 1354 27.0
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 3.5e-50 204.9 1344 26.2
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 3.9e-49 201.4 1015 23.7
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 4.1e-46 191.4 1074 24.5
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 6.9e-46 190.7 1292 27.2
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.0e-45 189.1 816 23.5
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 4.5e-45 188.0 595 27.6
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-43 183.3 892 25.2
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.1e-42 179.1 461 30.6
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 1.3e-36 159.8 168 51.2
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.7e-36 159.5 377 31.0
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.7e-36 159.5 802 25.4
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.2e-36 159.1 377 31.0
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.2e-36 159.1 377 31.0
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.5e-32 146.4 449 26.3
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 6.3e-31 141.0 497 30.0
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 5.0e-28 131.3 1259 23.7
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 2.5e-27 129.0 150 46.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.0e-25 123.6 271 32.1
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.0e-25 123.6 272 32.0
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 4.4e-24 118.2 304 30.3
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 3.7e-23 115.2 270 31.1
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 3.7e-23 115.2 457 27.4
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 1.8e-22 112.8 288 29.5
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 2.9e-20 105.5 128 46.1
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 2.7e-18 99.0 374 26.5
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.6e-18 98.6 130 43.1
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 3.0e-17 95.5 288 25.0
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 5.2e-17 94.7 148 43.2
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 2.6e-16 92.4 137 38.0
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 1.8e-14 86.3 290 26.2
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 5.3e-14 84.7 334 26.3
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 7.7e-13 80.9 110 41.8
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.8e-12 78.6 141 38.3
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 1.5e-11 76.6 118 39.0
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.2e-11 74.3 126 39.7
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.6e-10 72.0 110 40.9
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.0e-09 70.5 120 36.7
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 3.0e-09 68.9 145 34.5
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 5.2e-09 68.2 607 32.0
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 8.3e-07 60.8 129 34.1
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 1.4e-06 60.1 149 30.2
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 7.0e-06 57.8 47 51.1
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 9.1e-06 57.4 83 41.0


User provided reference genes

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