Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.5e-87 325.5 170 100.0
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 3.2e-50 202.2 122 92.6
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 1.9e-47 193.0 122 86.9
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 3.7e-43 178.7 126 76.2
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 2.4e-42 176.0 125 74.4
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 3.2e-42 175.6 125 73.6
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 1.2e-41 173.7 125 74.4
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.2e-41 173.7 125 72.8
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 1.2e-41 173.7 125 72.8
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 1.6e-41 173.3 125 73.6
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.0e-41 172.9 123 76.4
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 2.7e-41 172.6 126 73.8
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 3.5e-41 172.2 121 79.3
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.6e-41 171.8 126 74.6
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 4.6e-41 171.8 125 73.6
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 4.6e-41 171.8 127 74.0
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 4.6e-41 171.8 126 71.4
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.0e-40 170.6 126 73.0
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 1.0e-40 170.6 126 75.4
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.3e-40 170.2 120 72.5
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.3e-40 170.2 119 73.9
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 1.7e-40 169.9 120 74.2
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 2.3e-40 169.5 121 76.9
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 3.0e-40 169.1 126 73.8
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 3.9e-40 168.7 126 73.0
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 3.9e-40 168.7 120 74.2
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.9e-40 168.7 120 74.2
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.9e-40 168.7 120 74.2
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.9e-40 168.7 120 74.2
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.9e-40 168.7 120 74.2
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 3.9e-40 168.7 126 72.2
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 5.0e-40 168.3 125 71.2
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 5.0e-40 168.3 126 74.6
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 6.6e-40 167.9 125 74.4
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 6.6e-40 167.9 125 69.6
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 6.6e-40 167.9 126 73.8
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 6.6e-40 167.9 125 74.4
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 8.6e-40 167.5 104 87.5
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 8.6e-40 167.5 120 74.2
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.1e-39 167.2 121 74.4
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 1.1e-39 167.2 120 73.3
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.5e-39 166.8 121 73.6
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 1.5e-39 166.8 126 71.4
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 1.9e-39 166.4 126 70.6
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 1.9e-39 166.4 120 70.0
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.5e-39 166.0 120 75.0
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 2.5e-39 166.0 126 72.2
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 2.5e-39 166.0 126 71.4
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 2.5e-39 166.0 121 74.4
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 3.3e-39 165.6 126 73.0
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 4.3e-39 165.2 126 70.6
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 7.3e-39 164.5 121 71.9
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 7.3e-39 164.5 126 70.6
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 7.3e-39 164.5 126 72.2
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 9.5e-39 164.1 121 75.2
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 9.5e-39 164.1 121 75.2
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 9.5e-39 164.1 121 75.2
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 1.2e-38 163.7 126 71.4
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.6e-38 163.3 124 71.8
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 2.8e-38 162.5 120 70.8
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.6e-38 162.2 120 72.5
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 3.6e-38 162.2 126 71.4
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 3.6e-38 162.2 126 70.6
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 6.2e-38 161.4 121 71.1
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 6.2e-38 161.4 121 73.6
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 6.2e-38 161.4 126 71.4
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 8.1e-38 161.0 121 73.6
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 1.1e-37 160.6 121 73.6
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.1e-37 160.6 121 73.6
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.1e-37 160.6 121 73.6
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.1e-37 160.6 132 68.2
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 1.4e-37 160.2 137 64.2
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.4e-37 160.2 137 64.2
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 1.4e-37 160.2 130 70.0
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.4e-37 160.2 120 70.8
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 1.4e-37 160.2 121 68.6
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.4e-37 160.2 127 66.9
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.4e-37 160.2 125 69.6
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 3.1e-37 159.1 128 70.3
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 3.1e-37 159.1 121 71.1
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 3.1e-37 159.1 121 71.1
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 3.1e-37 159.1 123 67.5
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 4.0e-37 158.7 122 70.5
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 5.2e-37 158.3 127 66.9
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 6.8e-37 157.9 125 70.4
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 6.8e-37 157.9 126 66.7
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 6.8e-37 157.9 121 70.2
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 8.9e-37 157.5 123 67.5
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.2e-36 157.1 121 71.9
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 1.2e-36 157.1 120 70.8
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 1.5e-36 156.8 120 69.2
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 4.4e-36 155.2 127 66.9
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 7.5e-36 154.5 127 66.9
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 7.5e-36 154.5 132 65.9
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 7.5e-36 154.5 123 67.5
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 9.8e-36 154.1 125 68.0
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 4.9e-35 151.8 121 67.8
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 6.4e-35 151.4 127 65.4
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 8.3e-35 151.0 126 67.5
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 1.4e-34 150.2 125 66.4
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 1.4e-34 150.2 125 66.4
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 1.4e-34 150.2 125 66.4
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 1.4e-34 150.2 127 65.4
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 3.2e-34 149.1 125 65.6
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 3.2e-34 149.1 125 65.6
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 5.4e-34 148.3 125 62.4
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 7.1e-34 147.9 126 58.7
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 9.2e-34 147.5 111 71.2
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 9.2e-34 147.5 111 71.2
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 9.2e-34 147.5 123 65.0
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.6e-33 146.7 127 63.0
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 1.6e-33 146.7 128 64.1
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.6e-33 146.7 110 70.0
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 2.7e-33 146.0 129 62.8
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 3.5e-33 145.6 110 69.1
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 4.6e-33 145.2 120 62.5
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 6.0e-33 144.8 110 73.6
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 6.0e-33 144.8 108 72.2
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.0e-32 144.1 107 72.9
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.3e-32 143.7 126 59.5
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 3.0e-32 142.5 110 72.7
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.9e-31 139.8 110 68.2
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 2.8e-30 136.0 104 74.0
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 4.7e-30 135.2 126 57.1
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 4.0e-29 132.1 123 60.2
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 8.9e-29 131.0 126 56.3
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 1.2e-28 130.6 126 55.6
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 4.4e-28 128.6 127 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 4.1e-26 122.1 123 54.5
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 1.3e-24 117.1 126 55.6
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.7e-24 116.7 90 72.2
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 2.5e-23 112.8 103 62.1
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 3.6e-22 109.0 124 48.4
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 6.2e-22 108.2 122 52.5
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 8.1e-22 107.8 127 47.2
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.0e-20 103.2 90 62.2
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 7.6e-20 101.3 125 41.6
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 7.6e-20 101.3 63 81.0
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 1.9e-15 86.7 88 62.5
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 8.1e-14 81.3 93 54.8
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.4e-13 80.5 84 58.3
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 9.9e-12 74.3 75 56.0
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 2.9e-11 72.8 70 58.6
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 4.9e-11 72.0 65 61.5
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.0e-08 62.8 60 60.0
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 8.7e-08 61.2 85 52.9
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 2.5e-07 59.7 79 38.0
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 6.2e-06 55.1 84 36.9


User provided reference genes

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