Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.4e-56 219.9 109 100.0
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.4e-56 219.9 109 100.0
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.2e-47 193.0 105 88.6
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 8.0e-47 190.3 105 88.6
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 8.2e-44 180.3 105 80.0
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.4e-43 179.5 109 79.8
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.8e-43 179.1 105 79.0
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.6e-42 175.3 105 80.0
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 3.5e-42 174.9 105 77.1
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.5e-42 174.9 105 79.0
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 5.9e-42 174.1 109 75.2
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 7.7e-42 173.7 107 74.8
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.0e-41 173.3 105 78.1
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.3e-41 172.9 105 79.0
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.7e-41 172.6 105 77.1
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.2e-41 172.2 103 78.6
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 2.9e-41 171.8 105 76.2
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 3.8e-41 171.4 105 76.2
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 5.0e-41 171.0 105 76.2
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 6.5e-41 170.6 105 75.2
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 3.2e-40 168.3 106 71.7
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 4.2e-40 167.9 105 76.2
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 4.2e-40 167.9 103 75.7
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 4.2e-40 167.9 109 73.4
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 7.2e-40 167.2 105 72.4
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 7.2e-40 167.2 105 72.4
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 7.2e-40 167.2 105 72.4
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 9.4e-40 166.8 106 71.7
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 9.4e-40 166.8 105 71.4
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 1.2e-39 166.4 103 76.7
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.2e-39 166.4 107 71.0
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.6e-39 166.0 105 72.4
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 1.6e-39 166.0 103 75.7
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.6e-39 166.0 106 71.7
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.6e-39 166.0 103 74.8
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 2.1e-39 165.6 103 74.8
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.1e-39 165.6 105 72.4
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 2.1e-39 165.6 102 76.5
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 2.1e-39 165.6 105 72.4
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.7e-39 165.2 103 72.8
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.6e-39 164.9 105 71.4
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 3.6e-39 164.9 103 73.8
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 3.6e-39 164.9 103 74.8
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 4.7e-39 164.5 106 71.7
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 4.7e-39 164.5 105 71.4
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 4.7e-39 164.5 103 74.8
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 6.1e-39 164.1 103 72.8
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 8.0e-39 163.7 105 72.4
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.0e-38 163.3 107 69.2
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.0e-38 163.3 103 73.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.0e-38 163.3 105 72.4
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.0e-38 163.3 105 70.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.0e-38 163.3 105 71.4
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.0e-38 163.3 103 71.8
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 1.4e-38 162.9 105 69.5
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.8e-38 162.5 105 72.4
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.8e-38 162.5 105 75.2
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 2.3e-38 162.2 105 70.5
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 2.3e-38 162.2 103 75.7
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 2.3e-38 162.2 103 72.8
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 3.0e-38 161.8 104 75.0
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 5.2e-38 161.0 106 67.9
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 6.7e-38 160.6 103 70.9
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 8.8e-38 160.2 103 73.8
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 8.8e-38 160.2 106 68.9
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.2e-37 159.8 103 71.8
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.5e-37 159.5 102 73.5
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 2.0e-37 159.1 105 69.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.6e-37 158.7 103 73.8
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.3e-37 158.3 103 69.9
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 3.3e-37 158.3 105 72.4
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 5.7e-37 157.5 103 69.9
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 5.7e-37 157.5 105 71.4
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 5.7e-37 157.5 105 68.6
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 5.7e-37 157.5 106 67.9
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 7.5e-37 157.1 109 70.6
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 9.7e-37 156.8 103 69.9
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 1.3e-36 156.4 105 73.3
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.3e-36 156.4 104 71.2
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.7e-36 156.0 103 68.9
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.7e-36 156.0 104 69.2
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.7e-36 156.0 104 69.2
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.7e-36 156.0 105 70.5
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 2.2e-36 155.6 103 69.9
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.2e-36 155.6 105 67.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.8e-36 155.2 105 68.6
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.7e-36 154.8 104 69.2
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 6.3e-36 154.1 104 67.3
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 6.3e-36 154.1 104 67.3
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 8.2e-36 153.7 103 70.9
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 8.2e-36 153.7 104 67.3
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.1e-35 153.3 104 67.3
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.1e-35 153.3 103 71.8
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.4e-35 152.1 104 67.3
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 3.1e-35 151.8 104 66.3
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.1e-35 151.4 105 67.6
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 5.3e-35 151.0 105 68.6
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 7.0e-35 150.6 104 67.3
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.2e-34 149.8 93 73.1
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 2.0e-34 149.1 104 65.4
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.7e-34 148.7 105 68.6
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 3.5e-34 148.3 103 68.9
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 5.9e-34 147.5 103 67.0
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 3.8e-33 144.8 128 57.8
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 5.0e-33 144.4 104 64.4
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 5.5e-32 141.0 133 54.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 7.5e-29 130.6 76 80.3
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.1e-27 125.2 103 56.3
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.0e-27 124.0 76 77.6
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 7.0e-27 124.0 86 67.4
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.7e-26 122.1 105 53.3
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.5e-26 121.7 70 91.4
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-25 117.9 105 54.3
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.6e-25 117.1 105 53.3
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 1.5e-24 116.3 103 55.3
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.2e-24 114.8 105 50.5
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.8e-23 112.1 76 64.5
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 2.8e-23 112.1 76 64.5
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.8e-23 112.1 76 64.5
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.0e-22 110.2 99 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.4e-22 109.8 91 54.9
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.8e-22 109.4 76 64.5
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.8e-22 107.5 104 47.1
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 2.0e-21 105.9 56 87.5
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.6e-21 105.5 77 62.3
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 2.6e-21 105.5 77 62.3
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 2.6e-21 105.5 77 62.3
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 2.6e-21 105.5 77 62.3
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.2e-19 97.1 80 60.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.7e-18 95.5 56 78.6
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 4.5e-18 94.7 54 79.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.0e-17 93.6 99 48.5
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 5.0e-17 91.3 54 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.1e-16 90.1 76 52.6
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.5e-16 89.0 75 62.7
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.3e-16 88.6 45 77.8
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 9.5e-16 87.0 76 60.5
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.1e-15 85.9 104 40.4
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-14 83.6 83 51.8
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 5.2e-14 81.3 50 68.0
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.7e-09 66.2 107 36.4
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 2.5e-08 62.4 106 34.0
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 9.5e-08 60.5 87 34.5


User provided reference genes

Program Settings