Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 1.1e-107 393.3 194 100.0
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 5.9e-93 344.4 197 87.8
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 5.5e-91 337.8 194 86.6
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.1e-90 335.9 194 83.5
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 2.7e-90 335.5 194 84.0
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 7.9e-90 334.0 194 84.5
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 1.0e-89 333.6 194 84.0
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 3.9e-89 331.6 195 84.1
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 3.9e-89 331.6 194 84.0
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 6.7e-89 330.9 195 84.1
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 6.7e-89 330.9 194 84.0
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 1.5e-88 329.7 194 83.5
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.5e-88 329.7 194 84.0
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 2.0e-88 329.3 193 83.4
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 2.5e-88 328.9 194 82.5
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 2.5e-88 328.9 194 82.5
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 2.5e-88 328.9 194 82.5
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 3.3e-88 328.6 194 83.5
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 3.3e-88 328.6 199 80.4
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 3.3e-88 328.6 194 82.5
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 5.7e-88 327.8 194 80.4
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 7.4e-88 327.4 194 82.0
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 9.7e-88 327.0 194 83.0
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 1.3e-87 326.6 194 82.0
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 1.7e-87 326.2 194 80.9
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 2.2e-87 325.9 194 80.9
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 2.8e-87 325.5 193 81.3
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 3.7e-87 325.1 194 82.0
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 3.7e-87 325.1 194 81.4
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 3.7e-87 325.1 194 82.5
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 3.7e-87 325.1 194 82.5
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 3.7e-87 325.1 194 82.5
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 6.3e-87 324.3 193 82.4
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 6.3e-87 324.3 193 81.9
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 8.2e-87 323.9 194 80.9
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 8.2e-87 323.9 194 82.0
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 1.1e-86 323.6 194 81.4
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.4e-86 323.2 194 82.5
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.8e-86 322.8 194 82.5
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.4e-86 322.4 194 81.4
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.4e-86 322.4 194 81.4
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 2.4e-86 322.4 194 80.4
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 3.1e-86 322.0 194 81.4
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 3.1e-86 322.0 194 81.4
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 4.1e-86 321.6 194 80.4
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 5.3e-86 321.2 194 79.9
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 6.9e-86 320.9 194 80.4
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 6.9e-86 320.9 194 80.9
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 6.9e-86 320.9 194 81.4
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 9.1e-86 320.5 194 80.9
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 9.1e-86 320.5 192 80.2
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 9.1e-86 320.5 194 80.9
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 9.1e-86 320.5 194 80.4
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.2e-85 320.1 194 80.4
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.2e-85 320.1 196 79.1
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 2.0e-85 319.3 192 79.2
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 2.0e-85 319.3 196 79.6
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 2.6e-85 318.9 194 78.9
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 4.5e-85 318.2 194 79.9
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 5.9e-85 317.8 191 81.2
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 7.7e-85 317.4 194 79.9
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 7.7e-85 317.4 194 79.9
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 7.7e-85 317.4 194 80.4
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.0e-84 317.0 194 79.9
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 1.3e-84 316.6 194 78.9
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 2.2e-84 315.8 194 79.4
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 2.2e-84 315.8 194 78.9
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 2.2e-84 315.8 194 79.4
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 3.8e-84 315.1 194 77.8
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 3.8e-84 315.1 194 77.8
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 3.8e-84 315.1 194 80.4
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 3.8e-84 315.1 194 79.4
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 3.8e-84 315.1 194 79.4
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 6.5e-84 314.3 194 78.9
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 1.1e-83 313.5 195 79.0
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 1.1e-83 313.5 195 79.0
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.4e-83 313.2 194 78.9
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 1.9e-83 312.8 194 77.8
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.9e-83 312.8 194 77.3
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 2.5e-83 312.4 194 78.4
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 2.5e-83 312.4 194 77.8
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 3.2e-83 312.0 194 78.4
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 3.2e-83 312.0 194 78.4
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 3.2e-83 312.0 189 80.4
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.5e-83 311.2 194 78.4
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 5.5e-83 311.2 194 77.8
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 5.5e-83 311.2 196 77.0
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 9.4e-83 310.5 194 78.9
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 9.4e-83 310.5 194 78.4
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.2e-82 310.1 194 76.8
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.6e-82 309.7 194 78.9
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 1.6e-82 309.7 191 79.1
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 2.7e-82 308.9 194 77.8
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 2.7e-82 308.9 194 78.9
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.6e-82 308.5 194 78.4
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 4.7e-82 308.1 194 77.8
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 4.7e-82 308.1 194 76.3
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 6.1e-82 307.8 194 76.3
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 7.9e-82 307.4 183 83.6
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 2.3e-81 305.8 194 75.8
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 2.3e-81 305.8 194 75.3
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 4.4e-80 301.6 194 77.3
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.1e-78 295.4 193 74.1
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.1e-78 295.0 194 72.2
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 3.5e-77 292.0 194 72.2
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.5e-77 291.6 194 71.1
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 2.5e-67 259.2 194 64.4
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 2.1e-66 256.1 161 78.9
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.0e-65 252.3 194 61.3
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 2.6e-64 249.2 161 76.4
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 5.7e-64 248.1 194 62.9
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 4.8e-63 245.0 194 60.8
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 1.4e-62 243.4 160 73.1
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 3.1e-62 242.3 191 58.6
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 5.5e-59 231.5 151 77.5
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.8e-57 226.5 152 75.0
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.0e-54 214.5 188 53.2
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.0e-54 214.5 188 53.2
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.9e-52 209.1 195 49.2
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 1.1e-51 207.2 152 67.8
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 4.7e-50 201.8 193 54.4
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.6e-48 196.1 192 50.5
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 1.0e-44 184.1 186 51.1
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.3e-44 183.7 187 54.0
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 6.8e-41 171.4 192 49.5
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 2.0e-40 169.9 192 47.9
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 3.0e-36 156.0 91 81.3
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 6.8e-33 144.8 91 75.8
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 3.1e-25 119.4 79 72.2
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 3.4e-24 115.9 191 35.1
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 4.4e-24 115.5 189 34.9
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 4.6e-21 105.5 51 92.2
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 3.9e-12 75.9 166 30.7
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 1.5e-08 63.9 31 87.1
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.7e-07 60.5 28 92.9


User provided reference genes

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