Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 3.2e-174 615.1 344 100.0
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 3.3e-155 552.0 291 92.8
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 3.9e-148 528.5 292 87.7
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.5e-147 525.8 296 85.5
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.3e-146 523.5 302 85.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.6e-146 521.9 302 83.1
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 3.6e-146 521.9 302 83.4
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.4e-145 520.0 293 84.6
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.4e-145 519.2 296 83.1
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 4.0e-145 518.5 306 81.7
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 5.3e-145 518.1 302 82.1
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 5.3e-145 518.1 306 81.7
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.2e-144 516.9 303 82.2
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.4e-144 515.4 306 82.0
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 5.8e-144 514.6 302 82.8
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 7.6e-144 514.2 293 85.0
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 9.9e-144 513.8 302 82.5
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 9.9e-144 513.8 303 81.5
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.3e-143 513.5 302 81.8
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.2e-143 512.7 302 83.4
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.2e-143 512.7 300 83.0
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.1e-142 510.4 290 85.9
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.1e-142 510.4 298 81.9
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.9e-142 509.6 304 82.2
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.4e-142 509.2 302 80.8
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.4e-142 509.2 302 81.5
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 5.4e-142 508.1 302 81.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 7.1e-142 507.7 304 80.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 7.1e-142 507.7 294 82.3
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 9.3e-142 507.3 302 82.5
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 9.3e-142 507.3 300 81.7
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.2e-141 506.9 291 83.2
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 1.2e-141 506.9 304 80.6
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.2e-141 506.9 300 81.7
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.6e-141 506.5 300 81.7
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.6e-141 506.5 304 80.9
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.1e-141 506.1 296 82.4
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.7e-141 505.8 301 81.4
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 3.5e-141 505.4 299 81.9
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 3.5e-141 505.4 302 81.5
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 4.6e-141 505.0 296 82.4
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 6.0e-141 504.6 304 80.3
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 6.0e-141 504.6 304 80.6
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 7.9e-141 504.2 297 80.1
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 7.9e-141 504.2 313 78.9
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.9e-141 504.2 296 82.4
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 1.3e-140 503.4 300 81.3
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.3e-140 503.4 302 80.1
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.7e-140 503.1 293 82.3
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 2.3e-140 502.7 305 80.3
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 2.3e-140 502.7 302 80.8
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.0e-140 502.3 300 81.7
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.0e-140 502.3 312 78.2
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 3.9e-140 501.9 303 79.9
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 5.1e-140 501.5 293 81.2
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 6.6e-140 501.1 304 79.3
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.6e-140 501.1 308 79.5
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.6e-140 501.1 308 79.5
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 8.7e-140 500.7 304 79.6
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.1e-139 500.4 304 79.3
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.1e-139 500.4 300 80.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.5e-139 500.0 298 80.2
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.5e-139 500.0 302 80.1
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.9e-139 499.6 305 80.0
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.9e-139 499.6 298 80.9
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.9e-139 499.6 292 81.8
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.5e-139 499.2 302 80.1
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 3.3e-139 498.8 294 80.3
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.3e-139 498.8 294 80.6
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 3.3e-139 498.8 300 80.3
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 3.3e-139 498.8 298 79.9
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.1e-138 496.1 300 79.7
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.1e-138 496.1 294 79.6
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 2.8e-138 495.7 293 80.5
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 3.6e-138 495.4 306 78.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 8.1e-138 494.2 293 81.9
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.4e-137 493.4 284 82.7
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.4e-137 493.4 298 78.2
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.8e-137 493.0 293 81.6
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.8e-137 493.0 294 79.3
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 3.1e-137 492.3 288 80.9
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 5.3e-137 491.5 301 80.1
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.9e-137 491.1 304 77.0
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 9.9e-136 487.3 377 66.6
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 9.9e-136 487.3 316 76.9
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.3e-135 486.9 329 72.9
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.7e-135 486.5 295 80.3
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.4e-134 482.6 287 79.1
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 3.2e-134 482.3 301 78.4
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 5.4e-134 481.5 298 78.9
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.6e-133 479.9 304 78.3
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.6e-133 479.9 286 79.0
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.1e-133 479.6 301 78.7
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 6.0e-133 478.0 303 74.6
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.8e-132 476.5 303 75.2
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-131 473.4 287 80.8
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 6.2e-130 468.0 268 84.0
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 5.3e-129 464.9 272 82.0
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.7e-127 459.9 270 82.2
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.1e-126 457.2 272 80.9
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.4e-126 456.8 299 75.6
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 3.2e-126 455.7 300 75.0
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 6.0e-125 451.4 251 86.9
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 3.3e-123 445.7 275 81.5
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.8e-122 442.6 312 73.1
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.7e-122 442.2 302 73.2
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 5.3e-121 438.3 293 74.4
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 7.6e-120 434.5 283 71.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 3.5e-117 425.6 286 68.9
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.3e-115 418.7 293 72.7
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 7.4e-115 417.9 268 77.6
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 7.7e-112 407.9 287 69.3
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.2e-109 400.6 303 63.4
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 7.9e-109 397.9 226 85.0
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 6.7e-108 394.8 249 76.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 8.5e-103 377.9 253 75.1
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.2e-102 375.9 232 78.4
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 6.1e-101 371.7 219 80.8
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 9.7e-99 364.4 297 64.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 6.1e-93 345.1 228 76.8
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.0e-84 317.8 196 81.6
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 4.4e-83 312.4 185 81.1
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.6e-63 245.4 265 52.5
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 5.6e-62 242.3 147 80.3
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.1e-61 240.4 153 73.2
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-59 234.6 139 79.9
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.0e-56 223.8 136 82.4
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 4.3e-54 216.1 153 70.6
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.1e-52 211.5 132 72.7
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-47 194.9 108 79.6
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.7e-47 194.1 108 81.5
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.7e-40 170.2 271 43.9
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 7.3e-38 162.2 129 58.1
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.2e-37 161.4 112 67.0
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 3.4e-35 153.3 309 34.0
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 7.1e-33 145.6 117 60.7
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 4.0e-28 129.8 100 67.0
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 8.4e-26 122.1 318 33.3
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 1.5e-22 111.3 86 62.8
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.9e-22 110.9 84 61.9
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.3e-20 102.8 64 75.0
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.7e-18 97.8 53 79.2
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 4.9e-18 96.3 53 86.8
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 9.3e-17 92.0 88 56.8
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 9.3e-17 92.0 52 82.7
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.2e-16 91.7 89 57.3
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 3.5e-16 90.1 84 47.6
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 5.1e-15 86.3 53 75.5
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 6.5e-10 69.3 40 75.0
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 5.7e-06 56.2 50 58.0
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.6e-06 55.5 31 80.6


User provided reference genes

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