Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G4150 Erigeron canadensis HOM05D003680 ORTHO05D004264 6.3e-51 203.8 99 100.0
ECA246G0141 Erigeron canadensis HOM05D003680 ORTHO05D004264 9.8e-28 126.7 80 78.8
HanXRQChr17g0548551 Helianthus annuus HOM05D003680 ORTHO05D004264 7.5e-20 100.5 77 68.8
Haze_14726 Corylus avellana HOM05D003680 ORTHO05D004264 1.6e-17 92.8 82 61.0
Cc07_g01830 Coffea canephora HOM05D003680 ORTHO05D004264 2.7e-17 92.0 83 59.0
Cfa007382 Carpinus fangiana HOM05D003680 ORTHO05D004264 3.5e-17 91.7 82 59.8
Nitab4.5_0001890g0010 Nicotiana tabacum HOM05D003680 ORTHO05D004264 5.6e-15 84.3 84 54.8
Manes.15G166300 Manihot esculenta HOM05D003680 ORTHO05D004264 1.2e-14 83.2 83 54.2
PGSC0003DMG400028065 Solanum tuberosum HOM05D003680 ORTHO05D004264 1.6e-14 82.8 84 53.6
Solyc12g035240.2 Solanum lycopersicum HOM05D003680 ORTHO05D004264 2.1e-14 82.4 84 53.6
Sopen12g014830 Solanum pennellii HOM05D003680 ORTHO05D004264 8.1e-14 80.5 84 52.4
Oeu054618.2 Olea europaea HOM05D003680 ORTHO05D004264 1.1e-13 80.1 81 54.3
Solyc02g086520.3 Solanum lycopersicum HOM05D003680 ORTHO05D004264 1.1e-13 80.1 84 52.4
Sopen02g031250 Solanum pennellii HOM05D003680 ORTHO05D004264 1.1e-13 80.1 84 52.4
PGSC0003DMG400012598 Solanum tuberosum HOM05D003680 ORTHO05D004264 1.1e-13 80.1 84 53.6
Thecc.04G015600 Theobroma cacao HOM05D003680 ORTHO05D004264 1.4e-13 79.7 83 53.0
Glyma.19G004100 Glycine max HOM05D003680 ORTHO05D004264 1.8e-13 79.3 81 49.4
Dinv35099 Davidia involucrata HOM05D003680 ORTHO05D004264 5.2e-13 77.8 83 50.6
FvH4_4g26262 Fragaria vesca HOM05D003680 ORTHO05D004264 6.8e-13 77.4 83 48.2
FAN02G4059 Fragaria x ananassa HOM05D003680 ORTHO05D004264 6.8e-13 77.4 83 48.2
Sc03g0007570 Simmondsia chinensis HOM05D003680 ORTHO05D004264 6.8e-13 77.4 81 50.6
Potri.001G348500 Populus trichocarpa HOM05D003680 ORTHO05D004264 8.9e-13 77.0 82 53.7
QL02p075129 Quercus lobata HOM05D003680 ORTHO05D004264 8.9e-13 77.0 82 52.4
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.5e-12 76.3 83 47.0
FAN05G0183 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.0e-12 75.9 83 47.0
Gohir.D04G056700 Gossypium hirsutum HOM05D003680 ORTHO05D004264 2.0e-12 75.9 80 52.5
Gorai.012G063600 Gossypium raimondii HOM05D003680 ORTHO05D004264 2.0e-12 75.9 80 52.5
Glyma.05G004000 Glycine max HOM05D003680 ORTHO05D004264 3.4e-12 75.1 80 47.5
Nitab4.5_0000419g0090 Nicotiana tabacum HOM05D003680 ORTHO05D004264 4.4e-12 74.7 84 52.4
Nitab4.5_0002682g0050 Nicotiana tabacum HOM05D003680 ORTHO05D004264 4.4e-12 74.7 84 51.2
CiPaw.04G027800 Carya illinoinensis HOM05D003680 ORTHO05D004264 5.8e-12 74.3 82 52.4
Migut.H00085 Erythranthe guttata HOM05D003680 ORTHO05D004264 5.8e-12 74.3 79 49.4
Nitab4.5_0006802g0060 Nicotiana tabacum HOM05D003680 ORTHO05D004264 5.8e-12 74.3 84 51.2
VMungo0464G0243 Vigna mungo HOM05D003680 ORTHO05D004264 5.8e-12 74.3 83 49.4
DCAR_021716 Daucus carota HOM05D003680 ORTHO05D004264 9.9e-12 73.6 84 47.6
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 9.9e-12 73.6 83 49.4
Eucgr.J02234 Eucalyptus grandis HOM05D003680 ORTHO05D004264 9.9e-12 73.6 82 53.7
TPR.G14068 Trifolium pratense HOM05D003680 ORTHO05D004264 1.3e-11 73.2 81 49.4
MD09G1028500 Malus domestica HOM05D003680 ORTHO05D004264 1.7e-11 72.8 82 46.3
FAN12G0372 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.2e-11 72.4 83 45.8
Phvul.004G007500 Phaseolus vulgaris HOM05D003680 ORTHO05D004264 2.2e-11 72.4 84 48.8
MSTRG.3150 Avicennia marina HOM05D003680 ORTHO05D004264 2.9e-11 72.0 88 46.6
Aqoxy3G01124 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 3.7e-11 71.6 85 47.1
MSTRG.3151 Avicennia marina HOM05D003680 ORTHO05D004264 3.7e-11 71.6 84 50.0
Psat1g055600 Pisum sativum HOM05D003680 ORTHO05D004264 6.4e-11 70.9 81 48.1
AUR62043212 Chenopodium quinoa HOM05D003680 ORTHO05D004264 8.3e-11 70.5 85 50.6
FvH4_6g28150 Fragaria vesca HOM05D003680 ORTHO05D004264 1.4e-10 69.7 83 44.6
FAN14G2184 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.4e-10 69.7 83 44.6
Ca_04157_v3 Cicer arietinum L. HOM05D003680 ORTHO05D004264 1.9e-10 69.3 81 46.9
TAR622G0154 Trochodendron aralioides HOM05D003680 ORTHO05D004264 1.9e-10 69.3 88 48.9
PGR083G1310 Punica granatum HOM05D003680 ORTHO05D004264 2.4e-10 68.9 79 50.6
Medtr6g004930 Medicago truncatula HOM05D003680 ORTHO05D004264 4.1e-10 68.2 81 46.9
CAN.G473.3 Capsicum annuum HOM05D003680 ORTHO05D004264 5.4e-10 67.8 84 47.6
Ciclev10014743m.g Citrus clementina HOM05D003680 ORTHO05D004264 5.4e-10 67.8 82 46.3
EL10Ac4g08567 Beta vulgaris HOM05D003680 ORTHO05D004264 1.2e-09 66.6 78 51.3
TWI36G0939 Tripterygium wilfordii HOM05D003680 ORTHO05D004264 1.2e-09 66.6 83 49.4
Lalb_Chr06g0175821 Lupinus albus HOM05D003680 ORTHO05D004264 1.6e-09 66.2 75 45.3
vmacro18275 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 2.1e-09 65.9 74 51.4
CSS0042153 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 3.5e-09 65.1 83 47.0
Manes.15G166200 Manihot esculenta HOM05D003680 ORTHO05D004264 3.5e-09 65.1 72 52.8
Actinidia35765 Actinidia chinensis HOM05D003680 ORTHO05D004264 4.6e-09 64.7 79 45.6
CSS0037811 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 4.6e-09 64.7 83 47.0
Eucgr.I00119 Eucalyptus grandis HOM05D003680 ORTHO05D004264 7.8e-09 63.9 79 48.1
ATR1158G006 Amborella trichopoda HOM05D003680 ORTHO05D004264 1.7e-08 62.8 94 44.7
Oeu006814.2 Olea europaea HOM05D003680 ORTHO05D004264 1.7e-08 62.8 79 44.3
Cpa.g.sc108.54 Carica papaya HOM05D003680 ORTHO05D004264 2.3e-08 62.4 84 41.7
RcHm_v2.0_Chr2g0132111 Rosa chinensis HOM05D003680 ORTHO05D004264 2.3e-08 62.4 83 44.6
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.1e-08 61.2 77 51.9
Lj2g0009789 Lotus japonicus HOM05D003680 ORTHO05D004264 8.6e-08 60.5 75 44.0
Prupe.3G290000 Prunus persica HOM05D003680 ORTHO05D004264 2.5e-07 58.9 64 51.6
CANSAT64G1511 Cannabis sativa HOM05D003680 ORTHO05D004264 4.3e-07 58.2 85 44.7
Prupe.1G550900 Prunus persica HOM05D003680 ORTHO05D004264 4.3e-07 58.2 86 39.5
THA.LOC104822398 Tarenaya hassleriana HOM05D003680 ORTHO05D004264 4.3e-07 58.2 85 41.2
MD17G1030000 Malus domestica HOM05D003680 ORTHO05D004264 7.3e-07 57.4 65 47.7
Gohir.A11G066900 Gossypium hirsutum HOM05D003680 ORTHO05D004264 9.5e-07 57.0 73 46.6
Gohir.D11G070800 Gossypium hirsutum HOM05D003680 ORTHO05D004264 9.5e-07 57.0 73 46.6
Gorai.007G076000 Gossypium raimondii HOM05D003680 ORTHO05D004264 9.5e-07 57.0 73 46.6
Ah.06g187080 Amaranthus hybridus HOM05D003680 ORTHO05D004264 3.6e-06 55.1 85 47.1
arahy.Tifrunner.gnm1.ann1.WP4DQS Arachis hypogaea HOM05D003680 ORTHO05D004264 3.6e-06 55.1 68 44.1
arahy.Tifrunner.gnm1.ann1.YJRC23 Arachis hypogaea HOM05D003680 ORTHO05D004264 3.6e-06 55.1 68 44.1
CiPaw.03G042200 Carya illinoinensis HOM05D003680 ORTHO05D004264 3.6e-06 55.1 82 41.5
Os01g0169900 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 4.7e-06 54.7 100 39.0
Zm00001eb122990 Zea mays HOM05D003680 ORTHO05D004264 6.2e-06 54.3 90 36.7
COL.COLO4_29093 Corchorus olitorius HOM05D003680 ORTHO05D004264 8.1e-06 53.9 86 39.5


User provided reference genes

Program Settings