Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 0.0e+00 1988.8 1024 100.0
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 1.4e-209 734.2 1072 48.6
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 7.8e-136 489.2 1143 37.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 2.2e-130 471.1 1130 38.1
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 8.3e-130 469.2 936 42.5
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 7.3e-126 456.1 1168 36.2
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 1.5e-83 315.5 535 43.4
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.9e-78 298.5 1304 29.7
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.8e-77 294.7 1300 30.2
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.8e-77 293.9 1196 30.4
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.4e-76 292.4 1057 33.0
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.5e-75 287.3 1154 31.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.9e-75 287.0 1155 31.1
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 1.5e-70 272.3 1371 28.0
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 9.1e-68 263.1 1148 29.8
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 7.7e-67 260.0 1285 28.6
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.1e-65 256.1 1170 29.6
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 5.5e-65 253.8 985 32.3
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.2e-65 253.4 1251 28.7
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 6.7e-63 246.9 1220 28.4
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 6.3e-61 240.4 1225 27.6
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 3.1e-60 238.0 1141 28.7
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.1e-60 237.7 1246 27.8
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 7.0e-60 236.9 1275 27.8
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 9.1e-60 236.5 1246 27.6
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 4.5e-59 234.2 1073 29.0
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.7e-58 232.3 502 37.6
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 2.2e-58 231.9 1236 29.1
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 8.5e-58 229.9 1154 28.2
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 2.5e-57 228.4 1020 29.4
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 3.2e-57 228.0 1242 26.9
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 4.2e-57 227.6 1164 28.2
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.2e-57 227.6 1215 28.6
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 9.4e-57 226.5 1244 27.9
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 3.6e-56 224.6 1195 28.3
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 6.1e-56 223.8 1186 27.6
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.8e-55 222.2 1232 26.9
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.8e-55 222.2 1280 27.7
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 2.3e-55 221.9 681 32.5
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 2.3e-55 221.9 1203 28.8
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.0e-54 218.8 506 36.4
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 2.0e-54 218.8 1226 27.7
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 5.7e-54 217.2 1191 26.8
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.3e-53 216.1 518 37.5
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.2e-53 215.3 484 37.8
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.8e-53 214.9 484 38.0
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.8e-53 214.9 570 36.8
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.8e-52 212.2 1216 27.6
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.8e-52 212.2 484 37.6
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.8e-52 212.2 1194 26.7
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.8e-52 212.2 1334 26.4
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.8e-52 212.2 573 36.8
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.4e-52 211.8 665 34.0
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 4.5e-51 207.6 541 33.8
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 4.5e-51 207.6 545 36.9
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 5.9e-51 207.2 1207 27.1
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.7e-50 205.7 485 36.5
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.2e-50 205.3 972 29.1
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 2.9e-50 204.9 527 35.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 8.5e-50 203.4 534 35.4
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.5e-49 202.6 387 39.0
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 7.2e-49 200.3 1370 25.6
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 4.0e-47 194.5 631 33.1
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 4.0e-47 194.5 628 32.2
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 5.2e-47 194.1 1103 27.1
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 4.4e-46 191.0 627 30.8
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.7e-46 190.7 710 30.7
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 5.7e-46 190.7 630 33.7
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.5e-46 190.3 1082 27.6
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 9.8e-46 189.9 341 39.3
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 2.2e-45 188.7 419 37.7
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 8.3e-45 186.8 653 30.3
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 1.8e-44 185.7 638 31.7
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.2e-43 183.0 412 32.8
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.7e-43 181.8 420 38.8
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.9e-43 180.6 570 32.5
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-42 179.5 825 28.5
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.2e-42 178.7 1202 26.5
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 3.2e-41 174.9 698 31.9
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.5e-41 174.1 486 33.1
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 5.5e-41 174.1 975 26.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.2e-41 173.7 998 28.0
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.2e-40 172.9 504 32.9
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-40 172.2 814 28.4
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.1e-40 172.2 656 31.7
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 3.6e-40 171.4 1012 27.7
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.6e-40 171.4 1095 26.0
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 4.7e-40 171.0 960 27.9
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 4.0e-39 167.9 507 32.9
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.2e-39 167.5 394 32.0
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 6.8e-39 167.2 807 28.1
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 6.8e-39 167.2 622 31.0
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 8.8e-39 166.8 403 32.0
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.6e-38 165.2 516 32.6
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.4e-38 164.9 892 27.6
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.7e-38 164.1 544 30.5
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.3e-37 162.9 632 31.3
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.3e-37 162.9 632 31.3
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.3e-37 162.9 932 27.8
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.7e-37 162.5 426 34.7
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.2e-37 162.2 615 30.6
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.2e-37 162.2 645 31.9
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 2.8e-37 161.8 675 28.6
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.7e-37 161.4 687 29.0
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 4.9e-37 161.0 925 26.2
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.4e-36 159.5 807 27.8
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.8e-36 159.1 485 32.8
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.4e-36 158.7 907 27.2
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 2.4e-36 158.7 619 31.0
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.1e-36 158.3 894 27.6
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.4e-36 157.5 489 33.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 9.2e-36 156.8 506 32.0
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.6e-35 156.0 897 27.8
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 7.7e-35 153.7 907 26.4
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.9e-34 151.8 936 27.9
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 3.8e-34 151.4 908 27.0
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 5.0e-34 151.0 904 27.4
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.9e-33 149.1 977 26.4
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.9e-33 149.1 679 28.4
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 2.5e-33 148.7 906 26.5
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 2.5e-33 148.7 909 26.7
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.2e-32 146.4 591 29.8
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.6e-32 146.0 665 27.4
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 2.8e-32 145.2 305 36.1
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 4.7e-32 144.4 450 33.1
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.0e-31 143.3 959 26.3
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.4e-31 142.9 908 27.1
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.8e-31 142.5 676 29.0
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.8e-31 142.5 381 32.8
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 5.2e-31 141.0 628 28.2
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-30 139.8 941 24.9
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.2e-30 139.8 941 24.9
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 2.0e-30 139.0 1174 24.3
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 2.6e-30 138.7 462 29.0
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 3.4e-30 138.3 776 26.8
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.3e-29 136.3 929 26.0
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 2.9e-29 135.2 419 31.7
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 3.7e-29 134.8 386 32.1
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.9e-29 134.4 581 28.2
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 4.1e-28 131.3 777 27.0
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.0e-28 130.6 395 34.2
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 7.0e-28 130.6 776 26.9
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 2.0e-27 129.0 947 26.0
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 2.0e-27 129.0 947 26.0
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-26 126.3 963 25.1
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 6.6e-26 124.0 902 24.3
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.9e-25 122.5 910 24.7
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 2.5e-25 122.1 855 23.7
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 4.3e-25 121.3 1122 24.4
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 9.5e-25 120.2 863 22.8
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-24 119.0 886 24.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-23 116.7 878 22.3
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-22 113.2 810 25.8
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 4.6e-19 101.3 919 23.8
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 3.0e-18 98.6 585 26.0
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.0e-18 98.6 844 25.1
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 3.9e-18 98.2 557 26.2
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 3.3e-17 95.1 290 35.2
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.6e-16 91.7 300 29.3
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 1.5e-14 86.3 937 22.9
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 9.8e-14 83.6 400 27.8
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 6.4e-13 80.9 218 33.9
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.4e-12 79.0 79 51.9
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.1e-12 78.2 178 35.4
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 2.1e-11 75.9 322 23.6
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 4.6e-11 74.7 148 35.1
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 8.6e-10 70.5 217 29.0
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.5e-09 69.7 223 34.5
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 1.9e-09 69.3 538 24.9
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.9e-09 69.3 59 54.2
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 4.3e-09 68.2 224 28.6
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 5.6e-09 67.8 227 26.4
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 9.5e-09 67.0 209 28.7
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 8.1e-08 63.9 294 26.2
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 1.1e-07 63.5 231 25.5
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 8.9e-07 60.5 215 30.2
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 1.2e-06 60.1 226 26.1
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 1.5e-06 59.7 273 28.2
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 2.6e-06 58.9 213 27.7
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 5.8e-06 57.8 214 29.4
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 7.6e-06 57.4 213 26.8


User provided reference genes

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