Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.7e-54 215.7 103 100.0
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 6.6e-35 150.6 91 76.9
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 1.1e-32 143.3 92 69.6
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 6.8e-32 140.6 92 68.5
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 6.4e-30 134.0 80 70.0
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.1e-29 133.3 85 68.2
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.4e-29 132.1 80 71.2
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 5.4e-29 131.0 97 59.8
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.1e-28 129.0 96 60.4
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 7.8e-28 127.1 92 60.9
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.0e-27 126.7 83 63.9
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 1.7e-27 125.9 98 59.2
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 1.7e-27 125.9 94 60.6
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.7e-27 125.9 81 66.7
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.3e-27 125.6 91 61.5
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 2.3e-27 125.6 75 70.7
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 3.0e-27 125.2 91 60.4
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 3.9e-27 124.8 91 59.3
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 3.9e-27 124.8 80 63.8
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 5.1e-27 124.4 92 59.8
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 6.6e-27 124.0 92 58.7
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 8.6e-27 123.6 80 63.8
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 8.6e-27 123.6 81 65.4
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 8.6e-27 123.6 75 66.7
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 1.1e-26 123.2 91 62.6
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.9e-26 122.5 80 63.8
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 4.3e-26 121.3 89 59.6
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 5.6e-26 120.9 77 66.2
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 7.3e-26 120.6 77 63.6
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 2.1e-25 119.0 93 60.2
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 2.1e-25 119.0 95 56.8
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 2.8e-25 118.6 93 54.8
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 3.6e-25 118.2 75 64.0
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 3.6e-25 118.2 80 61.2
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 6.2e-25 117.5 77 61.0
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 6.2e-25 117.5 90 58.9
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 6.2e-25 117.5 81 63.0
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 8.1e-25 117.1 75 64.0
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 8.1e-25 117.1 76 65.8
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 8.1e-25 117.1 77 62.3
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 8.1e-25 117.1 90 55.6
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 1.4e-24 116.3 94 54.3
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 1.4e-24 116.3 81 63.0
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.4e-24 116.3 91 57.1
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.8e-24 115.9 79 60.8
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.8e-24 115.9 79 60.8
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 2.4e-24 115.5 98 57.1
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 6.8e-24 114.0 98 52.0
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 6.8e-24 114.0 81 60.5
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 8.9e-24 113.6 75 65.3
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.2e-23 113.2 98 49.0
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.2e-23 113.2 80 56.2
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 1.5e-23 112.8 84 54.8
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.6e-23 112.1 98 51.0
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 4.4e-23 111.3 85 52.9
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 7.6e-23 110.5 81 59.3
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 7.6e-23 110.5 91 54.9
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 9.9e-23 110.2 91 56.0
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 9.9e-23 110.2 102 52.0
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.2e-22 109.0 85 54.1
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 2.9e-22 108.6 92 52.2
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 2.9e-22 108.6 99 51.5
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.8e-22 108.2 77 58.4
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 3.8e-22 108.2 92 52.2
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 3.8e-22 108.2 92 53.3
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 6.4e-22 107.5 96 52.1
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 8.4e-22 107.1 92 46.7
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.1e-21 106.7 74 60.8
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.4e-21 106.3 102 47.1
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 2.4e-21 105.5 75 56.0
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 2.4e-21 105.5 80 55.0
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.2e-21 105.1 75 57.3
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 4.2e-21 104.8 88 51.1
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 4.2e-21 104.8 78 57.7
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 4.2e-21 104.8 100 53.0
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 7.1e-21 104.0 77 55.8
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.1e-21 104.0 98 46.9
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.1e-21 104.0 92 45.7
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 9.2e-21 103.6 75 53.3
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 9.2e-21 103.6 81 53.1
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.2e-20 103.2 77 57.1
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.6e-20 102.8 78 52.6
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.6e-20 102.8 77 55.8
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 1.6e-20 102.8 77 57.1
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 1.6e-20 102.8 94 47.9
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 1.6e-20 102.8 95 47.4
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 2.7e-20 102.1 98 48.0
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.5e-20 101.7 105 48.6
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 3.5e-20 101.7 95 46.3
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 4.6e-20 101.3 75 56.0
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 4.6e-20 101.3 98 48.0
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 6.0e-20 100.9 75 54.7
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 6.0e-20 100.9 98 48.0
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 7.8e-20 100.5 75 53.3
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 7.8e-20 100.5 99 49.5
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.8e-20 100.5 80 53.8
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 7.8e-20 100.5 75 60.0
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 7.8e-20 100.5 75 60.0
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.8e-20 100.5 98 46.9
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 1.0e-19 100.1 85 48.2
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.0e-19 100.1 88 48.9
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 1.3e-19 99.8 71 59.2
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.3e-19 99.8 80 53.8
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.7e-19 99.4 75 58.7
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.7e-19 99.4 83 55.4
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.3e-19 99.0 80 52.5
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 2.3e-19 99.0 83 51.8
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 3.0e-19 98.6 97 45.4
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 5.1e-19 97.8 84 47.6
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 5.1e-19 97.8 92 48.9
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 6.6e-19 97.4 92 47.8
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 6.6e-19 97.4 95 47.4
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 6.6e-19 97.4 92 46.7
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 8.7e-19 97.1 92 47.8
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 1.1e-18 96.7 80 51.2
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 1.5e-18 96.3 77 50.6
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.5e-18 96.3 82 53.7
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 2.5e-18 95.5 74 54.1
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.3e-18 95.1 83 53.0
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.3e-18 94.0 81 51.9
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.3e-18 94.0 83 53.0
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.3e-17 93.2 82 50.0
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 2.1e-17 92.4 77 50.6
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.6e-17 91.7 75 50.7
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 4.8e-17 91.3 93 43.0
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 8.1e-17 90.5 93 46.2
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 1.1e-16 90.1 102 43.1
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 1.1e-16 90.1 79 51.9
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.1e-16 90.1 99 49.5
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 1.4e-16 89.7 82 48.8
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 1.4e-16 89.7 82 48.8
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.1e-16 88.6 78 50.0
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 5.3e-16 87.8 94 42.6
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 5.3e-16 87.8 82 43.9
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 9.0e-16 87.0 78 46.2
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 9.0e-16 87.0 92 45.7
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 9.0e-16 87.0 93 41.9
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 1.2e-15 86.7 80 41.2
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 2.0e-15 85.9 73 47.9
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 9.9e-15 83.6 95 43.2
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 2.9e-14 82.0 94 37.2
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 2.1e-12 75.9 91 38.5
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 2.1e-12 75.9 101 34.7
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 6.0e-12 74.3 91 39.6
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 1.0e-11 73.6 91 39.6
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 1.0e-11 73.6 91 39.6
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 1.0e-11 73.6 91 39.6
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 1.0e-11 73.6 91 39.6
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.0e-11 73.6 68 50.0
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 2.3e-11 72.4 91 38.5
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 8.7e-11 70.5 86 43.0
SMO134G0054 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 1.9e-10 69.3 78 35.9
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 7.3e-10 67.4 91 34.1
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 2.1e-09 65.9 85 47.1
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 8.1e-09 63.9 106 35.8
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 8.1e-09 63.9 106 35.8
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 1.4e-08 63.2 94 36.2
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 3.1e-08 62.0 94 34.0
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 6.9e-08 60.8 93 36.6
A01p07300 Brassica napus HOM05D002739 ORTHO05D002877 6.9e-08 60.8 107 29.9
C01p08060 Brassica napus HOM05D002739 ORTHO05D002877 6.9e-08 60.8 107 29.9
BraA01t00679Z Brassica rapa HOM05D002739 ORTHO05D002877 6.9e-08 60.8 107 29.9
BcaC09g51875 Brassica carinata HOM05D002739 ORTHO05D002877 2.6e-07 58.9 97 32.0
BolC1t00795H Brassica oleracea HOM05D002739 ORTHO05D002877 2.6e-07 58.9 97 32.0
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 3.4e-07 58.5 77 33.8
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 4.5e-07 58.2 94 33.0
SMO111G0095 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 4.5e-07 58.2 83 31.3
THA.LOC104800444 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 5.8e-07 57.8 97 32.0
Ciclev10017226m.g Citrus clementina HOM05D002739 ORTHO05D002877 7.6e-07 57.4 96 30.2
SMO134G0150 Selaginella moellendorffii HOM05D002739 ORTHO05D002877 7.6e-07 57.4 53 35.8
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 3.8e-06 55.1 53 39.6
PSO349G0104 Papaver somniferum HOM05D002739 ORTHO05D002877 4.9e-06 54.7 78 34.6
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 6.4e-06 54.3 100 26.0
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 6.4e-06 54.3 96 27.1
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 8.4e-06 53.9 95 25.3
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 8.4e-06 53.9 95 25.3
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 8.4e-06 53.9 95 25.3
Zm00001eb369450 Zea mays HOM05D002739 ORTHO05D002877 8.4e-06 53.9 102 29.4


User provided reference genes

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