Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 3.0e-104 382.1 228 100.0
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 2.2e-38 163.3 233 50.6
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 1.7e-27 127.1 219 43.4
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 2.3e-27 126.7 231 41.6
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 2.9e-27 126.3 232 49.1
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 2.5e-26 123.2 225 43.1
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 2.5e-26 123.2 236 39.8
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 4.3e-26 122.5 253 39.5
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 3.6e-25 119.4 264 36.4
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 4.7e-25 119.0 235 37.9
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 4.7e-25 119.0 267 37.8
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 1.0e-24 117.9 235 39.6
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.0e-24 117.9 229 42.8
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 5.2e-24 115.5 207 40.6
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 4.4e-23 112.5 257 35.8
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 1.3e-22 110.9 238 37.4
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 2.9e-22 109.8 247 42.9
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 6.4e-22 108.6 233 36.9
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 8.3e-22 108.2 246 36.2
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.4e-21 107.5 233 36.9
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 1.4e-21 107.5 233 36.9
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 1.9e-21 107.1 260 36.5
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 4.1e-21 105.9 253 39.1
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 7.0e-21 105.1 229 37.1
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 9.2e-21 104.8 251 37.1
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.6e-20 104.0 269 33.8
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 2.7e-20 103.2 216 35.2
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 4.6e-20 102.4 232 37.5
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 4.6e-20 102.4 219 38.8
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 6.0e-20 102.1 252 36.9
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 6.0e-20 102.1 238 34.9
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 1.0e-19 101.3 225 38.7
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.3e-19 100.9 243 37.0
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 3.9e-19 99.4 248 35.9
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 5.0e-19 99.0 146 44.5
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 8.6e-19 98.2 232 39.7
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.9e-18 97.1 219 36.1
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 2.5e-18 96.7 239 33.9
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 3.3e-18 96.3 239 33.9
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 7.3e-18 95.1 263 32.7
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 9.5e-18 94.7 224 36.2
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 9.5e-18 94.7 230 35.2
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 1.2e-17 94.4 236 34.3
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.2e-17 94.4 187 38.0
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 2.8e-17 93.2 215 32.6
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 3.6e-17 92.8 252 33.7
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 4.7e-17 92.4 233 33.9
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 4.7e-17 92.4 208 34.6
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 4.7e-17 92.4 274 30.3
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 4.7e-17 92.4 271 31.7
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 4.7e-17 92.4 250 34.8
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 1.4e-16 90.9 210 35.7
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 1.8e-16 90.5 252 32.5
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.8e-16 90.5 243 33.3
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.8e-16 90.5 242 30.2
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 2.3e-16 90.1 215 37.2
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 3.1e-16 89.7 234 36.3
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 4.0e-16 89.4 150 45.3
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 6.8e-16 88.6 216 37.5
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 8.9e-16 88.2 220 34.1
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.6e-15 86.7 276 31.5
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 2.6e-15 86.7 257 32.3
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 7.5e-15 85.1 146 40.4
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 4.9e-14 82.4 283 31.1
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 8.3e-14 81.6 225 33.3
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 1.1e-13 81.3 234 31.6
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.1e-13 81.3 225 34.2
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.9e-13 80.5 231 34.2
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 1.2e-12 77.8 241 32.0
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 3.5e-12 76.3 208 32.7
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 1.7e-11 73.9 77 54.5
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 1.1e-10 71.2 100 48.0
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 2.5e-10 70.1 265 30.9
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 1.2e-09 67.8 187 40.6
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 1.2e-09 67.8 221 29.4
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 1.6e-09 67.4 101 47.5
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 2.1e-09 67.0 233 30.9
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 2.8e-09 66.6 236 29.7
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 4.7e-09 65.9 138 34.8
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 8.1e-09 65.1 266 27.8
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 5.2e-08 62.4 182 35.7
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 5.2e-08 62.4 182 35.7
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 2.6e-07 60.1 209 37.3
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 2.6e-07 60.1 215 33.0
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 3.4e-07 59.7 44 65.9
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 7.6e-07 58.5 143 35.7
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 2.9e-06 56.6 214 34.1
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 3.7e-06 56.2 124 38.7


User provided reference genes

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