Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.5e-92 342.8 170 100.0
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 7.1e-34 147.9 90 87.8
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 5.2e-29 131.7 86 77.9
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 3.8e-27 125.6 86 74.4
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 1.7e-24 116.7 86 67.4
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 3.3e-23 112.5 90 63.3
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 3.3e-23 112.5 86 67.4
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 5.6e-23 111.7 86 67.4
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 9.6e-23 110.9 87 66.7
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 1.2e-22 110.5 88 65.9
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.2e-22 110.5 88 65.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 2.8e-22 109.4 88 65.9
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 2.8e-22 109.4 87 66.7
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 2.8e-22 109.4 87 65.5
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 3.6e-22 109.0 90 63.3
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 3.6e-22 109.0 90 65.6
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 6.2e-22 108.2 86 64.0
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 6.2e-22 108.2 87 64.4
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 1.1e-21 107.5 87 65.5
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 1.4e-21 107.1 86 62.8
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 1.4e-21 107.1 87 65.5
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 2.4e-21 106.3 87 64.4
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 2.4e-21 106.3 91 59.3
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 4.0e-21 105.5 86 61.6
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 4.0e-21 105.5 96 57.3
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 4.0e-21 105.5 89 65.2
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 5.2e-21 105.1 86 60.5
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 1.5e-20 103.6 87 62.1
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.0e-20 103.2 87 63.2
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.0e-20 103.2 87 63.2
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 2.0e-20 103.2 87 64.4
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 2.6e-20 102.8 91 59.3
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 2.6e-20 102.8 88 61.4
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 3.4e-20 102.4 90 58.9
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 5.8e-20 101.7 87 62.1
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 7.6e-20 101.3 87 62.1
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 1.3e-19 100.5 87 60.9
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 1.3e-19 100.5 91 60.4
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 1.3e-19 100.5 90 60.0
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 1.3e-19 100.5 87 62.1
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 1.7e-19 100.1 86 61.6
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.7e-19 100.1 86 61.6
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.7e-19 100.1 86 61.6
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 1.7e-19 100.1 86 58.1
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 2.2e-19 99.8 87 62.1
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.9e-19 99.4 87 60.9
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.9e-19 99.4 87 60.9
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 2.9e-19 99.4 92 57.6
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 2.9e-19 99.4 92 57.6
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 3.8e-19 99.0 86 62.8
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 3.8e-19 99.0 86 61.6
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 6.4e-19 98.2 92 56.5
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 8.4e-19 97.8 86 55.8
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 4.2e-18 95.5 89 60.7
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 5.4e-18 95.1 86 57.0
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 7.1e-18 94.7 87 57.5
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 9.3e-18 94.4 87 59.8
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 9.3e-18 94.4 90 54.4
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 9.3e-18 94.4 90 54.4
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 9.3e-18 94.4 86 59.3
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 9.3e-18 94.4 86 59.3
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.2e-17 94.0 86 60.5
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 1.6e-17 93.6 87 57.5
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 2.1e-17 93.2 87 59.8
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 2.1e-17 93.2 87 59.8
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 2.7e-17 92.8 86 59.3
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 2.7e-17 92.8 87 58.6
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 2.7e-17 92.8 86 54.7
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 2.7e-17 92.8 87 58.6
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 3.5e-17 92.4 87 58.6
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 6.0e-17 91.7 87 56.3
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.0e-16 90.9 98 55.1
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 1.0e-16 90.9 88 56.8
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 1.0e-16 90.9 87 56.3
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 2.3e-16 89.7 88 58.0
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 3.0e-16 89.4 87 56.3
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 6.6e-16 88.2 86 52.3
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 8.7e-16 87.8 87 52.9
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 8.7e-16 87.8 87 54.0
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 1.1e-15 87.4 87 55.2
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 1.1e-15 87.4 87 51.7
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.5e-15 87.0 87 51.7
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.5e-15 87.0 86 48.8
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 2.5e-15 86.3 71 63.4
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 3.3e-15 85.9 70 64.3
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 4.3e-15 85.5 87 52.9
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 4.3e-15 85.5 87 52.9
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 9.6e-15 84.3 92 47.8
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.3e-14 84.0 87 51.7
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 8.1e-14 81.3 87 50.6
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 1.8e-13 80.1 87 49.4
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 2.4e-13 79.7 92 50.0
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 3.1e-13 79.3 88 45.5
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 3.1e-13 79.3 98 45.9
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 4.0e-13 79.0 87 49.4
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 4.0e-13 79.0 87 49.4
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.3e-13 78.6 62 67.7
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 2.0e-12 76.6 87 47.1
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.6e-12 76.3 93 45.2
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 2.6e-12 76.3 86 50.0
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 4.5e-12 75.5 88 48.9
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 9.9e-12 74.3 87 47.1
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 9.9e-12 74.3 87 47.1
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 2.9e-11 72.8 93 45.2
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.9e-11 72.8 89 47.2
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 4.9e-11 72.0 90 47.8
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 6.4e-11 71.6 90 47.8
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 6.4e-11 71.6 92 48.9
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 1.1e-10 70.9 87 48.3
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 7.1e-10 68.2 98 38.8
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 3.5e-09 65.9 93 41.9
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 6.0e-09 65.1 84 44.0
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 2.3e-08 63.2 89 40.4
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 3.0e-08 62.8 92 38.0
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 3.0e-08 62.8 88 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.5e-07 60.5 105 41.0
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 4.3e-07 58.9 102 37.3
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 7.4e-07 58.2 53 56.6
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 2.1e-06 56.6 81 42.0


User provided reference genes

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