Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.5e-73 278.9 162 100.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 5.1e-42 174.9 150 68.7
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.4e-39 166.8 163 67.5
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.4e-36 156.8 160 57.5
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 2.0e-33 146.4 151 57.6
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 7.0e-31 137.9 170 57.6
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 4.5e-30 135.2 164 53.7
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-29 132.9 164 52.4
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-29 132.9 164 52.4
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 6.5e-29 131.3 165 52.1
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-28 130.6 164 51.8
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.5e-28 130.2 168 52.4
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 2.5e-28 129.4 172 51.7
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.2e-27 127.1 149 52.3
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.6e-27 126.7 183 48.6
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.0e-26 122.5 183 47.5
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.0e-26 122.1 161 49.1
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 4.0e-26 122.1 161 49.1
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 6.7e-26 121.3 174 51.1
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.5e-25 120.2 167 52.1
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.0e-25 119.8 178 56.2
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 2.0e-25 119.8 151 51.7
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 2.6e-25 119.4 167 49.1
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 3.3e-25 119.0 167 51.5
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 3.3e-25 119.0 165 47.9
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 4.4e-25 118.6 183 43.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 7.5e-25 117.9 167 52.7
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 9.7e-25 117.5 140 50.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.3e-24 117.1 156 50.6
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-24 116.3 154 49.4
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-24 116.3 154 49.4
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.2e-24 116.3 158 46.8
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 2.8e-24 115.9 151 53.6
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.7e-24 115.5 156 54.5
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 4.8e-24 115.2 148 52.0
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 4.8e-24 115.2 160 46.2
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 4.8e-24 115.2 165 47.3
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-23 114.0 158 46.8
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.1e-23 114.0 158 46.8
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.1e-23 114.0 155 47.1
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.1e-23 114.0 167 48.5
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.8e-23 113.2 151 57.0
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 4.1e-23 112.1 175 44.0
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.0e-23 111.3 152 53.9
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 7.0e-23 111.3 155 56.1
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.1e-23 110.9 164 44.5
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.5e-22 109.0 154 55.8
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 3.5e-22 109.0 167 47.3
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 5.9e-22 108.2 157 46.5
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.3e-21 107.1 153 49.7
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.3e-21 107.1 179 49.2
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.7e-21 106.7 147 47.6
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 3.8e-21 105.5 155 49.7
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 8.5e-21 104.4 183 48.1
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-20 104.0 169 47.3
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.5e-20 103.6 169 43.8
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.5e-20 103.6 162 45.7
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.9e-20 103.2 161 49.1
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.9e-20 103.2 161 49.1
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.9e-20 103.2 173 50.3
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.9e-20 103.2 176 51.1
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.5e-20 102.8 158 51.3
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.5e-20 102.8 176 51.7
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 2.5e-20 102.8 171 48.5
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 5.5e-20 101.7 160 45.0
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 5.5e-20 101.7 144 50.0
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 5.5e-20 101.7 168 47.0
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 5.5e-20 101.7 166 45.8
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 9.4e-20 100.9 176 44.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.2e-19 100.5 178 43.8
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.2e-19 100.5 155 51.0
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-19 100.1 178 50.0
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 2.1e-19 99.8 193 42.5
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 2.1e-19 99.8 193 42.5
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.6e-19 99.0 176 50.0
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 6.1e-19 98.2 150 46.0
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.0e-18 97.4 178 43.3
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.0e-18 97.4 169 39.6
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.0e-18 97.4 135 54.1
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.4e-18 97.1 183 40.4
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.8e-18 96.7 189 43.4
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 2.3e-18 96.3 184 41.8
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 5.2e-18 95.1 176 45.5
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 6.8e-18 94.7 177 45.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 6.8e-18 94.7 177 45.2
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 8.8e-18 94.4 193 43.5
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 8.8e-18 94.4 169 42.0
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 8.8e-18 94.4 182 44.5
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 1.2e-17 94.0 179 44.7
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.0e-17 93.2 163 48.5
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.0e-17 93.2 163 47.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 2.0e-17 93.2 182 40.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.4e-17 92.4 150 44.7
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 4.4e-17 92.0 163 42.3
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.7e-17 91.7 154 46.1
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 5.7e-17 91.7 165 46.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 5.7e-17 91.7 165 46.1
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 5.7e-17 91.7 189 40.2
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 7.5e-17 91.3 174 40.8
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.5e-17 91.3 163 41.7
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 7.5e-17 91.3 188 39.9
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.3e-16 90.5 153 48.4
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.7e-16 90.1 165 40.6
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.2e-16 89.7 141 53.9
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 3.7e-16 89.0 153 50.3
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 3.7e-16 89.0 142 45.8
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 8.3e-16 87.8 153 43.1
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.1e-15 87.4 179 43.0
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 5.4e-15 85.1 161 47.2
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.2e-14 84.0 174 39.7
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.6e-14 83.6 165 38.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 2.0e-14 83.2 155 39.4
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.0e-13 80.9 168 35.7
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.0e-13 80.9 167 37.7
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 3.8e-13 79.0 103 55.3
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 5.0e-13 78.6 173 37.0
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 8.5e-13 77.8 147 42.2
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.2e-12 75.5 169 38.5
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.2e-11 73.9 160 37.5
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.7e-11 72.8 153 44.4
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.4e-10 70.5 103 44.7
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 4.0e-10 68.9 180 40.6
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 5.2e-10 68.6 146 39.0
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 8.8e-10 67.8 131 42.0
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.5e-09 67.0 94 47.9
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.5e-09 67.0 94 47.9
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.5e-09 67.0 94 47.9
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.5e-09 67.0 151 34.4
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.4e-09 65.9 96 47.9
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.4e-09 65.9 96 47.9
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.4e-09 65.5 97 43.3
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 5.7e-09 65.1 109 39.4
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.8e-09 64.3 96 47.9
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-08 63.2 138 39.9
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 3.7e-08 62.4 174 35.1
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 3.7e-08 62.4 174 35.1
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.3e-08 61.6 67 74.6
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 8.3e-08 61.2 90 43.3
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.1e-07 60.8 90 43.3
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.8e-07 60.1 129 37.2
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.4e-07 58.5 127 39.4
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.4e-07 58.5 127 39.4
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.7e-06 56.2 101 41.6
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 3.5e-06 55.8 58 50.0


User provided reference genes

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