Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.1e-161 573.5 370 100.0
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.7e-62 243.4 223 61.4
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 4.3e-60 236.1 223 59.6
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 3.0e-53 213.4 153 71.9
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 5.1e-53 212.6 153 71.2
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 3.8e-40 169.9 166 51.2
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.4e-39 167.9 364 35.7
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.2e-39 166.8 368 34.8
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 9.3e-39 165.2 163 51.5
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.0e-38 162.5 368 35.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 6.0e-38 162.5 207 46.9
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 5.1e-37 159.5 191 44.5
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 8.7e-37 158.7 364 34.9
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.1e-36 158.3 230 40.4
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.5e-36 157.1 155 50.3
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.3e-36 156.4 155 49.7
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.3e-35 154.8 207 42.5
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.6e-35 154.5 369 32.5
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 2.1e-35 154.1 241 40.7
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 2.1e-35 154.1 155 49.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.1e-35 154.1 371 31.8
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.8e-35 152.9 189 45.0
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 8.1e-35 152.1 208 43.8
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 8.1e-35 152.1 192 46.4
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 8.1e-35 152.1 250 39.2
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.1e-35 152.1 206 45.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.4e-34 151.4 393 30.8
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.4e-34 151.4 204 43.6
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.8e-34 151.0 165 52.1
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.8e-34 151.0 208 43.8
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.4e-34 150.6 369 32.8
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.4e-34 150.6 368 38.6
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 3.1e-34 150.2 200 42.5
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.1e-34 150.2 146 53.4
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.1e-34 150.2 155 47.7
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 9.0e-34 148.7 202 44.6
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 9.0e-34 148.7 249 38.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 9.0e-34 148.7 374 30.5
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.2e-33 148.3 237 38.8
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.2e-33 148.3 330 33.6
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.2e-33 148.3 174 49.4
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.2e-33 148.3 159 46.5
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.5e-33 147.9 186 42.5
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.5e-33 147.9 249 39.8
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.5e-33 147.9 146 52.1
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.5e-33 147.9 193 46.1
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.0e-33 147.5 191 46.1
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.6e-33 147.1 180 44.4
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 3.4e-33 146.7 200 42.0
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.0e-32 145.2 237 37.6
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.0e-32 145.2 227 39.6
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.0e-32 145.2 146 51.4
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.0e-32 145.2 163 49.7
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.7e-32 144.4 200 42.0
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.7e-32 144.4 198 41.9
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.9e-32 143.7 248 39.1
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.9e-32 143.7 134 53.0
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.8e-32 143.3 163 48.5
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.9e-32 142.9 247 38.9
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.5e-32 142.5 360 31.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 6.5e-32 142.5 190 46.3
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 6.5e-32 142.5 155 47.1
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 8.4e-32 142.1 113 55.8
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 8.4e-32 142.1 330 34.5
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.4e-32 142.1 113 55.8
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 8.4e-32 142.1 147 50.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 8.4e-32 142.1 167 44.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.1e-31 141.7 220 42.3
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-31 141.0 113 55.8
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.9e-31 141.0 153 48.4
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.9e-31 141.0 182 41.8
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.5e-31 140.6 359 32.3
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 2.5e-31 140.6 155 48.4
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 3.2e-31 140.2 161 45.3
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 3.2e-31 140.2 161 45.3
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 3.2e-31 140.2 224 37.5
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 3.2e-31 140.2 212 39.6
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.2e-31 140.2 150 49.3
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 3.2e-31 140.2 217 41.5
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.2e-31 139.8 212 39.6
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.2e-31 139.8 212 39.2
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.1e-31 139.0 129 52.7
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 9.3e-31 138.7 144 48.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.2e-30 138.3 153 49.0
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.2e-30 138.3 153 49.0
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.2e-30 138.3 183 44.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.1e-30 137.5 240 38.8
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 3.5e-30 136.7 217 39.6
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 4.6e-30 136.3 361 43.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 7.9e-30 135.6 204 43.1
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.0e-29 135.2 155 47.7
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-29 134.8 209 38.8
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 2.3e-29 134.0 211 39.8
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.3e-29 134.0 237 37.1
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 3.9e-29 133.3 217 39.2
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 8.7e-29 132.1 233 36.9
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.5e-28 131.3 121 54.5
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 4.3e-28 129.8 155 43.2
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 2.8e-27 127.1 123 49.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.8e-27 127.1 149 46.3
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 2.8e-27 127.1 193 39.9
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 3.7e-27 126.7 158 43.7
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 6.3e-27 125.9 175 41.1
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.4e-26 124.0 374 29.4
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 5.3e-26 122.9 120 47.5
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 2.0e-25 120.9 134 47.8
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.9e-25 119.4 135 43.7
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 5.9e-25 119.4 239 36.0
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.3e-24 118.2 195 37.4
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.3e-24 118.2 165 41.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 3.8e-24 116.7 158 40.5
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 3.8e-24 116.7 165 42.4
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 3.8e-24 116.7 165 42.4
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 5.0e-24 116.3 145 43.4
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 6.5e-24 115.9 164 42.1
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.1e-23 115.2 165 41.8
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.1e-23 115.2 165 41.8
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.4e-23 114.8 145 37.9
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.4e-23 114.8 130 50.8
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.9e-23 114.4 364 28.6
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 4.2e-23 113.2 132 44.7
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 4.2e-23 113.2 152 39.5
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.2e-23 112.5 114 47.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.2e-22 111.7 144 38.2
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 2.1e-22 110.9 375 28.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 3.5e-22 110.2 222 36.0
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 4.6e-22 109.8 184 38.6
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.3e-21 107.5 167 38.3
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.0e-21 107.1 155 41.9
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.1e-21 106.3 155 41.9
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.7e-21 105.9 137 37.2
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 6.7e-21 105.9 117 47.9
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.5e-20 104.8 381 26.2
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 2.5e-20 104.0 113 45.1
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.3e-20 103.6 245 32.7
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.3e-20 103.6 245 32.7
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.4e-20 102.4 79 57.0
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 9.7e-20 102.1 109 49.5
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.6e-19 101.3 159 37.1
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.8e-19 100.5 85 52.9
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 6.3e-19 99.4 130 44.6
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 9.0e-18 95.5 112 46.4
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-16 91.7 157 35.7
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 7.2e-15 85.9 155 37.4
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 4.6e-14 83.2 231 29.4
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.1e-14 82.8 97 47.4
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.9e-13 80.1 76 51.3
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 5.1e-13 79.7 162 34.6
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 4.3e-12 76.6 117 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 3.7e-11 73.6 140 36.4
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.2e-11 72.4 72 47.2
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.1e-10 72.0 85 41.2
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.4e-10 71.6 128 35.2
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 2.0e-09 67.8 121 38.0
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 5.9e-09 66.2 85 43.5
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 8.5e-08 62.4 149 33.6
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.5e-07 60.8 140 29.3
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 5.5e-07 59.7 54 51.9
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.2e-06 58.5 80 42.5
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.7e-06 56.6 51 45.1


User provided reference genes

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