Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1869.4 931 100.0
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1406.0 931 75.7
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 0.0e+00 1254.6 936 69.6
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1171.0 923 64.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1164.1 956 62.0
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 956 61.9
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1149.8 957 61.2
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1146.3 930 62.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 959 61.9
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1127.1 955 60.3
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1126.3 955 60.2
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1114.8 943 61.0
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1114.8 956 60.3
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 943 60.3
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1106.3 929 62.2
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1098.6 938 60.6
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 945 60.2
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 949 59.6
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 945 60.2
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1092.4 937 59.9
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 943 59.9
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 928 61.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 945 59.8
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1087.4 937 61.5
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1086.6 935 61.7
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1085.9 964 59.2
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1083.9 941 61.2
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 945 60.7
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 939 59.7
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 984 57.5
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1079.3 943 60.3
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 931 60.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1077.4 926 59.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 968 58.9
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1075.5 950 58.5
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 6.4e-312 1073.5 941 59.8
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 1.3e-311 1073.2 956 58.8
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 1.3e-311 1073.2 933 60.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.3e-311 1072.8 968 58.6
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 4.5e-311 1071.2 958 58.9
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 7.6e-311 1070.5 1003 57.5
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 7.6e-311 1070.5 1008 56.3
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 1.3e-310 1069.7 981 57.6
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 2.2e-310 1068.9 957 59.2
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.8e-310 1068.5 1002 57.2
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 3.7e-310 1068.1 943 60.0
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 1.4e-309 1066.2 965 58.2
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.8e-309 1065.8 1002 57.2
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 1.2e-308 1063.1 941 58.4
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 2.0e-308 1062.4 971 58.3
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 3.5e-308 1061.6 928 60.5
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 5.9e-308 1060.8 941 59.4
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 5.0e-307 1057.7 975 56.9
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 5.0e-307 1057.7 951 58.1
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 2.5e-306 1055.4 940 58.2
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 4.2e-306 1054.7 942 58.2
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 7.2e-306 1053.9 930 58.9
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.6e-305 1052.7 952 59.3
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 2.7e-305 1052.0 938 58.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 5.2e-304 1047.7 938 58.1
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 6.7e-304 1047.3 938 58.1
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 6.7e-304 1047.3 938 58.1
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 1.1e-303 1046.6 942 58.0
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 2.6e-303 1045.4 944 58.5
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 4.4e-303 1044.6 942 58.2
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.2e-302 1042.3 949 58.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 2.8e-302 1042.0 942 58.4
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 5.3e-301 1037.7 945 56.6
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 9.1e-301 1036.9 941 57.3
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 3.5e-300 1035.0 1030 54.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.0e-299 1033.5 944 57.7
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 1.3e-299 1033.1 939 57.3
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.3e-299 1033.1 905 58.2
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 2.2e-299 1032.3 917 58.0
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.1e-298 1030.0 953 57.1
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.9e-298 1029.2 944 57.0
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 6.1e-297 1024.2 970 56.5
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.4e-296 1023.1 932 57.6
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.0e-296 1021.9 859 62.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 8.8e-296 1020.4 937 58.2
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 8.8e-296 1020.4 954 55.8
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.2e-295 1020.0 976 55.9
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 3.4e-295 1018.5 944 56.8
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 4.4e-295 1018.1 949 57.3
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 7.5e-295 1017.3 959 57.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 4.8e-294 1014.6 947 56.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 1.8e-293 1012.7 935 57.2
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 1.8e-293 1012.7 935 57.2
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 7.0e-293 1010.7 924 57.1
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.7e-292 1008.8 1065 51.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.7e-291 1006.1 899 59.0
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 4.2e-290 1001.5 955 56.8
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.6e-289 999.6 873 60.3
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.1e-289 999.2 900 58.4
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.0e-288 996.9 960 54.3
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.8e-285 986.1 944 55.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.7e-284 982.2 1026 52.5
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.0e-280 970.3 1048 51.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.8e-277 959.5 961 54.1
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.0e-276 956.1 972 54.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.3e-275 953.4 1054 50.2
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 2.9e-275 952.2 862 58.0
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 5.0e-275 951.4 855 58.1
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.1e-274 950.3 940 54.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.3e-274 948.3 1055 50.7
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 3.6e-273 945.3 1162 47.6
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 4.7e-273 944.9 956 53.6
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 6.2e-273 944.5 916 56.1
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.2e-272 941.4 973 53.8
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 8.3e-270 934.1 832 58.4
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.5e-263 913.3 819 59.0
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 2.4e-248 862.8 965 50.6
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.0e-247 859.8 931 50.8
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.2e-246 856.3 765 59.6
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 4.2e-245 852.0 940 49.1
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.9e-238 829.3 931 47.8
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 6.0e-236 821.6 855 51.1
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.3e-233 813.9 779 54.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.2e-229 799.3 1080 42.1
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.5e-223 778.9 696 59.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.0e-211 741.1 735 55.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 4.7e-188 662.5 646 54.8
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.9e-182 643.3 643 54.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 8.0e-180 635.2 689 52.1
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.2e-177 627.1 405 74.1
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 7.0e-168 595.5 766 46.1
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.6e-151 541.2 365 71.2
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.9e-149 534.3 382 69.4
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.2e-147 526.2 411 64.7
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.2e-132 478.4 481 55.7
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 5.1e-126 456.4 583 48.7
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 4.0e-123 446.8 299 72.6
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 8.7e-118 429.1 566 46.3
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 7.4e-117 426.0 276 71.7
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.1e-116 424.5 721 38.6
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.5e-109 401.7 300 64.7
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.3e-100 372.1 480 46.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.8e-100 370.9 319 58.9
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 9.0e-99 365.9 359 51.3
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.2e-79 302.4 224 64.3
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.1e-51 207.6 139 67.6
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-46 192.6 150 64.7
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.5e-40 171.8 210 46.2
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 3.3e-40 171.4 118 68.6
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 5.8e-29 134.0 131 53.4
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.9e-28 131.7 76 81.6
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.4e-27 127.5 292 35.6
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.6e-26 124.4 119 53.8
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.6e-26 124.4 89 65.2
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 3.6e-23 114.8 112 50.0
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.6e-23 114.8 86 57.0
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 7.3e-16 90.5 66 68.2
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.6e-15 89.4 80 61.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.2e-13 83.2 160 34.4
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.4e-11 75.5 68 54.4
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.7e-09 69.3 66 45.5
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.3e-09 68.9 50 62.0
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.0e-09 68.6 50 64.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.9e-09 68.2 53 64.2
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 1.1e-08 66.6 53 54.7
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.1e-08 66.6 53 52.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.1e-08 66.6 53 52.8
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.3e-07 63.2 40 72.5
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.3e-07 63.2 52 61.5
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.1e-07 62.4 46 60.9
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 6.2e-07 60.8 84 41.7
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 5.3e-06 57.8 146 32.2


User provided reference genes

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