Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 1.4e-162 576.2 290 100.0
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 6.4e-136 487.6 287 85.0
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 2.3e-133 479.2 286 84.6
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.5e-97 360.1 248 71.4
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.9e-96 355.9 246 70.3
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.1e-95 354.0 251 68.9
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.1e-95 354.0 251 70.1
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.1e-95 354.0 251 70.5
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 5.5e-95 351.7 246 69.5
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.7e-94 349.4 251 70.1
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 3.6e-94 349.0 252 69.0
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 3.6e-94 349.0 252 69.0
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.4e-93 347.1 250 67.2
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 2.3e-93 346.3 252 69.0
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 3.9e-93 345.5 247 70.0
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 3.9e-93 345.5 253 68.0
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 5.1e-93 345.1 246 70.3
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 6.7e-93 344.7 268 66.0
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.1e-92 344.0 248 68.1
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.1e-92 344.0 246 69.9
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.5e-92 343.6 243 69.1
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 1.5e-92 343.6 281 62.3
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 2.6e-92 342.8 246 68.3
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 2.6e-92 342.8 243 68.7
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 4.4e-92 342.0 247 66.4
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 7.4e-92 341.3 292 62.0
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 7.4e-92 341.3 246 67.9
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.7e-91 340.1 246 69.5
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 1.7e-91 340.1 247 69.2
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.7e-91 340.1 290 59.7
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 2.8e-91 339.3 234 69.2
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.7e-91 339.0 246 66.7
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 3.7e-91 339.0 246 68.7
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 4.8e-91 338.6 246 66.7
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 6.3e-91 338.2 243 69.5
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 8.2e-91 337.8 246 67.5
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 8.2e-91 337.8 271 63.1
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.4e-90 337.0 260 67.3
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 2.4e-90 336.3 271 62.7
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 3.1e-90 335.9 246 68.7
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 3.1e-90 335.9 246 68.3
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 4.1e-90 335.5 246 69.1
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 5.3e-90 335.1 248 66.5
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 5.3e-90 335.1 271 63.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 9.1e-90 334.3 246 68.3
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.2e-89 334.0 246 68.3
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.2e-89 334.0 271 63.8
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.5e-89 333.6 248 68.1
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.5e-89 333.6 248 68.5
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 2.0e-89 333.2 227 69.6
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 3.4e-89 332.4 245 67.8
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 3.4e-89 332.4 256 63.7
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 4.5e-89 332.0 246 67.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 5.9e-89 331.6 246 67.5
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 7.7e-89 331.3 250 66.4
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.0e-88 330.9 246 65.4
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 1.0e-88 330.9 247 67.6
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.3e-88 330.5 232 67.7
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.7e-88 330.1 246 67.9
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.7e-88 330.1 246 68.3
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.7e-88 330.1 249 66.3
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 2.2e-88 329.7 247 69.2
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.9e-88 329.3 245 67.8
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 3.8e-88 328.9 244 68.0
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 3.8e-88 328.9 247 66.8
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 5.0e-88 328.6 246 67.1
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 5.0e-88 328.6 247 66.8
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 8.5e-88 327.8 247 66.4
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.9e-87 326.6 252 64.3
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 2.5e-87 326.2 248 66.9
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.5e-87 326.2 246 66.7
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.2e-87 325.9 246 67.5
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 4.2e-87 325.5 226 70.8
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 4.2e-87 325.5 247 67.6
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 5.5e-87 325.1 261 63.6
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 5.5e-87 325.1 246 67.5
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 5.5e-87 325.1 245 66.1
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 7.2e-87 324.7 244 66.8
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 9.4e-87 324.3 245 67.8
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 9.4e-87 324.3 245 67.8
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.2e-86 323.9 252 65.9
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.2e-86 323.9 245 67.8
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 1.2e-86 323.9 245 67.8
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 2.1e-86 323.2 245 65.7
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 4.7e-86 322.0 246 66.7
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 1.4e-85 320.5 225 70.2
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 6.7e-85 318.2 229 64.6
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 8.8e-85 317.8 252 63.1
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.1e-84 317.4 297 56.2
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 5.7e-84 315.1 247 66.0
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 9.7e-84 314.3 248 64.9
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 9.7e-84 314.3 215 72.6
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.8e-83 312.8 249 64.3
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 4.1e-82 308.9 249 64.3
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 4.1e-82 308.9 226 69.5
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.6e-81 307.0 263 61.2
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 4.5e-81 305.4 232 63.4
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 5.9e-81 305.1 249 61.4
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.8e-80 302.4 271 57.6
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 4.2e-79 298.9 237 61.2
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 9.4e-79 297.7 228 66.2
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 6.1e-78 295.0 232 60.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.4e-77 293.9 236 60.2
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.8e-74 283.5 267 54.7
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.4e-74 283.1 299 52.8
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.5e-73 279.3 333 48.6
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 3.8e-72 275.8 212 63.7
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 5.0e-72 275.4 212 63.2
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.3e-69 266.5 192 67.2
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 8.8e-69 264.6 231 57.1
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.6e-68 263.1 231 58.9
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.4e-68 262.7 237 54.4
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 3.1e-66 256.1 185 69.2
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 3.5e-65 252.7 183 66.7
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.3e-64 250.8 233 52.4
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.0e-61 239.6 253 49.4
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.6e-60 236.5 190 59.5
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 5.4e-58 228.8 186 62.4
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 6.0e-41 172.2 218 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 3.0e-40 169.9 148 55.4
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 5.0e-40 169.1 244 43.0
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.6e-33 147.5 127 56.7
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.7e-33 146.7 145 55.9
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.1e-23 114.8 337 28.8
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 8.4e-19 98.6 91 59.3
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 1.6e-17 94.4 88 60.2
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 9.9e-12 75.1 47 76.6
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 1.4e-10 71.2 84 48.8


User provided reference genes

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