Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 1.7e-252 875.5 451 100.0
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.2e-220 768.8 456 87.9
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 5.4e-198 694.5 450 79.8
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.5e-195 685.6 375 90.1
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 3.6e-194 681.8 441 78.7
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.0e-193 680.2 452 77.0
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.8e-193 679.5 404 84.7
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 6.8e-193 677.6 423 80.6
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.5e-192 676.4 391 86.2
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 2.6e-192 675.6 448 77.7
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 4.4e-192 674.9 442 78.5
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 4.4e-192 674.9 442 78.5
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 5.8e-192 674.5 418 81.1
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.3e-191 673.3 445 78.9
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.3e-191 673.3 403 84.4
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 2.2e-191 672.5 403 84.6
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 4.9e-191 671.4 403 84.1
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 4.9e-191 671.4 439 77.7
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.4e-190 669.8 433 79.2
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 2.4e-190 669.1 391 85.2
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 2.4e-190 669.1 444 76.4
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 3.2e-190 668.7 405 82.5
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 3.2e-190 668.7 409 82.4
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 4.1e-190 668.3 376 87.2
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 5.4e-190 667.9 391 85.2
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 7.0e-190 667.5 398 83.2
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 7.0e-190 667.5 437 78.3
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 2.0e-189 666.0 414 81.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 2.0e-189 666.0 403 83.4
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 2.0e-189 666.0 458 75.8
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 2.0e-189 666.0 435 77.9
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.7e-189 665.6 405 82.5
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.7e-189 665.6 440 77.5
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 4.6e-189 664.8 400 83.5
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 4.6e-189 664.8 444 78.6
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 4.6e-189 664.8 388 84.5
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 6.0e-189 664.5 451 75.6
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 7.8e-189 664.1 403 83.1
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 7.8e-189 664.1 391 84.4
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.3e-188 663.3 430 80.2
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.3e-188 663.3 445 77.3
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.7e-188 662.9 446 77.1
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.3e-188 662.5 440 78.0
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 3.0e-188 662.1 418 80.4
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 5.0e-188 661.4 392 84.7
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 5.0e-188 661.4 404 82.9
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 6.6e-188 661.0 406 82.5
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 1.1e-187 660.2 433 77.4
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.1e-187 660.2 444 76.4
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.1e-187 660.2 413 81.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.9e-187 659.4 441 77.1
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.9e-187 659.4 408 80.9
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 3.3e-187 658.7 443 76.1
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 4.3e-187 658.3 443 76.1
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 4.3e-187 658.3 446 76.7
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 5.6e-187 657.9 446 76.7
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 7.3e-187 657.5 440 76.4
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 7.3e-187 657.5 420 80.2
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 9.5e-187 657.1 422 79.4
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 9.5e-187 657.1 444 76.4
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.2e-186 656.8 433 76.9
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.2e-186 656.8 443 75.6
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.2e-186 656.8 444 75.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.2e-186 656.8 412 80.6
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.2e-186 656.8 410 80.2
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.2e-186 656.8 444 76.6
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.6e-186 656.4 440 76.1
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.6e-186 656.4 433 81.5
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 2.8e-186 655.6 401 81.5
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.6e-186 655.2 391 83.9
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 3.6e-186 655.2 443 76.1
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 6.2e-186 654.4 401 82.0
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 8.0e-186 654.1 443 75.4
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 8.0e-186 654.1 477 73.8
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 1.4e-185 653.3 401 81.8
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.8e-185 652.9 404 80.7
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.8e-185 652.9 411 80.3
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.8e-185 652.9 407 80.3
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 2.3e-185 652.5 405 79.8
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.3e-185 652.5 440 76.4
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.3e-185 652.5 411 80.0
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.3e-185 652.5 440 76.4
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 2.3e-185 652.5 412 79.9
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 3.1e-185 652.1 444 75.0
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.1e-185 652.1 511 69.1
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 4.0e-185 651.7 444 75.5
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 5.2e-185 651.4 450 75.3
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 8.9e-185 650.6 429 77.4
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.5e-184 649.8 367 86.1
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 2.0e-184 649.4 370 85.4
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 2.6e-184 649.0 401 79.8
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.4e-184 648.7 455 74.5
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 4.4e-184 648.3 407 80.1
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 7.5e-184 647.5 365 85.8
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 2.9e-183 645.6 398 81.2
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 3.2e-182 642.1 424 77.1
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 9.2e-182 640.6 405 79.8
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.6e-181 639.8 404 80.2
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.5e-179 633.3 372 83.9
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.0e-176 622.9 404 75.7
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.7e-175 619.8 404 75.5
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 8.3e-175 617.5 390 80.5
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.9e-171 606.3 328 90.9
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 7.3e-171 604.4 376 76.6
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 9.9e-168 594.0 364 78.0
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 8.4e-167 590.9 454 69.4
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 3.0e-164 582.4 365 74.5
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 9.6e-163 577.4 391 72.1
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.4e-161 573.5 448 69.9
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 8.4e-159 564.3 329 83.6
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 2.4e-158 562.8 377 75.1
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 3.1e-153 545.8 388 69.6
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.8e-151 538.9 287 92.3
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 7.4e-147 524.6 471 61.1
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 6.2e-146 521.5 373 67.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 6.9e-145 518.1 287 86.8
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 1.2e-136 490.7 418 58.6
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.2e-133 480.7 376 68.1
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.4e-129 466.5 363 62.3
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 5.3e-129 465.3 282 84.0
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.3e-127 460.7 339 72.3
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.2e-119 433.3 280 76.4
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.4e-118 430.6 233 90.1
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.1e-110 404.4 310 67.4
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.7e-106 389.4 448 52.2
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.1e-97 359.4 224 76.3
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.1e-89 331.6 256 67.6
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 5.9e-80 302.4 187 73.3
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.1e-78 298.1 273 60.8
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 4.7e-77 292.7 299 49.2
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 5.4e-73 279.3 246 61.0
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 4.7e-69 266.2 161 80.7
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 7.5e-67 258.8 355 43.1
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 3.9e-55 219.9 367 41.4
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 1.5e-51 208.0 175 62.9
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 4.2e-49 199.9 163 67.5
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.6e-46 188.7 184 59.8
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.4e-44 184.1 113 76.1
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 6.9e-28 129.4 83 71.1
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 6.9e-28 129.4 83 71.1
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 4.5e-27 126.7 77 76.6
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 6.5e-26 122.9 129 54.3
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 6.5e-26 122.9 129 54.3
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 8.7e-23 112.5 113 54.0
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 7.4e-22 109.4 71 73.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.8e-18 97.1 69 66.7
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.3e-17 92.4 84 60.7
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.4e-09 68.6 37 83.8
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 8.8e-07 59.3 106 42.5


User provided reference genes

Program Settings