Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 0.0e+00 1092.8 541 100.0
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.8e-256 889.0 537 80.8
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 8.3e-238 827.0 534 76.8
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 3.3e-218 761.9 542 69.2
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 2.4e-216 755.7 540 69.4
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.4e-215 751.5 531 68.0
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 7.6e-215 750.7 502 70.7
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.2e-214 749.2 537 68.5
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 4.9e-214 748.0 531 67.6
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.4e-213 746.5 530 68.7
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.4e-213 746.5 511 70.3
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.9e-213 746.1 538 67.5
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.3e-213 743.8 538 66.7
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 7.8e-212 740.7 500 69.2
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.0e-211 740.3 516 67.6
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.0e-211 740.3 540 67.8
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 3.0e-211 738.8 537 66.1
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.1e-211 738.0 545 66.1
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 6.6e-211 737.6 514 69.6
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 2.5e-210 735.7 535 65.8
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 4.3e-210 734.9 539 66.2
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.6e-209 733.0 537 66.3
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 2.8e-209 732.3 500 68.6
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 4.8e-209 731.5 517 66.9
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.4e-208 729.9 503 68.6
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.9e-208 727.6 528 66.7
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 9.0e-208 727.2 537 66.3
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 4.5e-207 724.9 520 68.1
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.8e-207 724.5 528 66.5
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 5.8e-207 724.5 514 68.7
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 9.9e-207 723.8 537 65.2
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 1.3e-206 723.4 539 66.2
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.3e-206 723.4 541 66.2
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 2.2e-206 722.6 500 67.6
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 2.2e-206 722.6 537 64.8
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 2.9e-206 722.2 531 65.0
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 4.9e-206 721.5 536 66.0
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 6.4e-206 721.1 514 66.9
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.1e-205 720.3 539 65.1
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 1.4e-205 719.9 500 68.8
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 3.2e-205 718.8 512 67.2
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 3.2e-205 718.8 500 68.4
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 4.2e-205 718.4 528 66.1
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 4.2e-205 718.4 543 65.4
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 4.6e-204 714.9 533 65.1
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.0e-203 713.8 504 68.1
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 1.3e-203 713.4 538 64.9
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.8e-203 713.0 540 65.7
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 3.0e-203 712.2 508 67.9
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 6.7e-203 711.1 518 66.8
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 4.3e-202 708.4 520 66.9
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 4.3e-202 708.4 498 67.3
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 5.6e-202 708.0 513 66.9
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 7.4e-202 707.6 535 62.8
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.3e-201 706.8 528 65.9
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 2.8e-201 705.7 540 65.6
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 3.6e-201 705.3 535 64.1
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.4e-200 703.4 550 63.1
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 1.8e-200 703.0 533 63.0
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.6e-199 699.1 497 66.6
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 3.8e-198 695.3 505 65.7
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 3.8e-198 695.3 504 66.1
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 4.9e-198 694.9 512 65.0
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.1e-197 693.7 517 66.0
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 2.4e-197 692.6 513 64.7
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 2.4e-197 692.6 543 62.1
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 9.3e-197 690.6 549 62.3
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 2.7e-196 689.1 510 65.1
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 2.7e-196 689.1 487 66.3
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.8e-195 686.4 511 66.1
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 3.0e-195 685.6 487 68.2
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 5.1e-195 684.9 527 63.8
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 6.7e-195 684.5 542 63.8
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 3.3e-194 682.2 509 66.0
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 8.1e-193 677.6 495 67.3
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.4e-192 676.8 514 64.4
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 1.4e-192 676.8 535 62.8
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 6.9e-192 674.5 554 61.6
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 3.4e-191 672.2 517 62.7
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 3.8e-190 668.7 519 63.2
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 7.1e-189 664.5 523 62.5
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.3e-185 653.7 460 70.0
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 4.1e-184 648.7 507 63.9
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 5.3e-184 648.3 508 64.0
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.5e-183 646.7 465 65.6
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 5.1e-179 631.7 515 60.6
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 8.7e-179 630.9 421 72.9
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.3e-177 627.1 513 59.6
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 2.4e-168 596.3 419 69.5
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 3.4e-167 592.4 574 53.5
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 5.0e-166 588.6 500 59.0
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 2.7e-164 582.8 517 56.9
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 7.9e-164 581.3 428 65.0
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.8e-161 572.8 540 52.4
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.7e-155 551.6 535 51.6
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 6.7e-155 551.6 535 51.6
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.3e-153 547.4 377 68.7
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.7e-153 547.0 472 55.1
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 7.0e-152 541.6 419 64.9
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 3.0e-147 526.2 389 64.8
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 7.0e-144 515.0 375 67.5
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 1.3e-142 510.8 439 57.4
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 5.5e-141 505.4 383 64.2
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 8.8e-139 498.0 344 70.6
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 5.9e-135 485.3 375 62.7
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-127 460.3 467 54.0
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 8.6e-126 454.9 536 49.8
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.6e-124 450.7 539 47.1
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 6.8e-123 445.3 489 50.7
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 3.1e-115 419.9 435 52.9
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 1.2e-103 381.3 281 65.1
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 5.1e-86 322.8 457 38.5
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 1.7e-81 307.8 240 63.8
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.4e-74 283.5 235 60.0
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 3.4e-58 230.3 189 59.3
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 5.5e-56 223.0 198 56.6
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.2e-47 195.3 132 69.7
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 5.7e-45 186.4 160 57.5
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.8e-43 181.4 140 62.1
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 9.1e-43 179.1 134 62.7
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 9.1e-43 179.1 497 29.2
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.5e-40 171.8 123 62.6
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 5.5e-40 169.9 110 68.2
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 5.9e-26 123.2 89 60.7
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 7.7e-26 122.9 133 51.9
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.1e-24 119.0 106 52.8
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.1e-24 119.0 106 52.8
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.1e-24 119.0 106 52.8
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.5e-24 117.9 75 72.0
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 6.8e-22 109.8 85 64.7
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 9.2e-19 99.4 77 63.6
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 1.9e-11 75.1 301 27.2
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 4.1e-11 73.9 305 27.5
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.2e-10 72.4 303 27.4
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 2.0e-10 71.6 302 27.8
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 4.6e-10 70.5 301 26.9
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 6.0e-10 70.1 303 28.1
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 6.0e-10 70.1 43 67.4
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 7.8e-10 69.7 300 26.0
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.0e-09 69.3 300 25.7
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 1.0e-09 69.3 300 26.0
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 1.7e-09 68.6 303 26.1
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 2.3e-09 68.2 302 28.5
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 2.3e-09 68.2 301 26.6
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 3.0e-09 67.8 303 25.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 3.0e-09 67.8 349 25.5
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 3.0e-09 67.8 300 26.7
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 3.9e-09 67.4 343 27.7
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 5.0e-09 67.0 303 26.1
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 5.0e-09 67.0 349 25.2
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 5.0e-09 67.0 302 27.5
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 8.6e-09 66.2 303 25.4
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.1e-08 65.9 295 26.8
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 1.5e-08 65.5 300 25.3
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 3.3e-08 64.3 362 24.0
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 3.3e-08 64.3 362 24.0
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 4.3e-08 63.9 294 26.2
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 4.3e-08 63.9 361 24.1
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 4.3e-08 63.9 361 24.1
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 5.6e-08 63.5 362 24.0
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 2.1e-07 61.6 358 24.0
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.8e-07 61.2 88 43.2
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 3.6e-07 60.8 359 24.0
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 3.6e-07 60.8 358 24.3
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 8.0e-07 59.7 358 24.0
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 8.0e-07 59.7 358 24.0
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 1.4e-06 58.9 278 24.8
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 1.4e-06 58.9 301 23.9
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 1.4e-06 58.9 272 27.2
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 1.8e-06 58.5 303 23.4
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 2.3e-06 58.2 191 27.7
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 2.3e-06 58.2 210 26.2
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 3.1e-06 57.8 360 23.6
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 3.1e-06 57.8 304 24.3
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 5.2e-06 57.0 365 24.9


User provided reference genes

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