Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1613.2 827 100.0
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1458.0 829 90.2
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1399.8 831 86.4
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1266.5 839 77.4
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1266.5 828 77.3
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1262.7 828 77.1
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1260.0 838 77.0
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1257.3 839 76.8
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1255.0 840 77.5
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1253.0 838 77.0
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1251.1 839 76.9
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1246.5 839 76.6
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1245.0 843 77.1
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1243.0 838 76.6
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1242.6 837 76.2
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1241.1 830 77.1
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1239.6 842 76.0
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1238.8 841 75.4
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1238.0 837 76.2
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1236.9 828 76.7
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1236.5 835 75.9
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1236.5 844 76.2
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1236.1 839 76.3
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1235.7 832 75.5
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1233.0 832 76.2
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1233.0 832 76.2
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1232.6 829 77.0
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1232.2 838 76.1
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1229.9 840 75.4
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1228.4 869 74.1
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1225.7 839 74.9
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1225.7 840 75.4
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1224.5 849 74.9
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1220.3 900 71.7
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1218.8 839 74.5
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1218.0 832 75.7
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1216.8 839 74.4
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1214.5 829 74.8
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1214.5 829 74.8
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1212.2 839 75.2
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1209.1 824 75.4
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1208.4 841 74.7
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1207.6 840 74.0
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1207.6 829 74.1
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1205.7 830 74.9
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1203.7 831 75.0
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1198.0 839 74.4
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1196.0 873 71.6
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1195.3 838 73.7
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1194.1 830 74.0
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1192.6 833 73.6
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1188.7 833 73.5
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1188.7 844 73.1
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1187.6 844 73.3
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1186.8 829 73.2
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1186.0 855 72.5
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1182.5 845 73.7
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1177.9 853 72.5
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1175.6 836 72.0
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1174.8 829 72.6
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1174.5 842 73.0
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1171.0 833 73.2
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1171.0 830 72.5
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1170.2 830 72.8
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1169.1 838 71.6
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1167.1 839 71.8
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1166.4 850 72.0
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1163.7 832 73.0
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1163.3 831 72.9
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1162.5 847 71.7
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1161.7 843 72.4
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1160.2 828 71.4
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1159.4 844 72.2
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1152.5 828 71.0
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1152.1 837 72.5
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1151.7 1047 60.9
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1150.6 831 70.9
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1150.6 829 71.4
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1150.2 831 72.3
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1149.8 831 71.0
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1149.8 829 70.9
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1147.9 833 70.9
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1143.6 846 69.7
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1143.3 850 69.5
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1142.9 978 63.4
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1132.9 838 70.3
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1131.7 843 70.1
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1111.3 847 67.2
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1109.0 840 68.3
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1103.6 832 71.8
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1100.1 844 67.7
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1096.6 744 76.9
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1096.3 834 68.0
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1094.0 827 70.3
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1080.9 840 65.6
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1078.5 843 67.5
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 5.7e-312 1073.9 836 66.4
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 7.6e-307 1057.0 845 66.9
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 2.4e-305 1052.0 830 64.9
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 1.7e-303 1045.8 833 64.1
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 8.6e-303 1043.5 837 67.3
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 8.1e-301 1036.9 742 71.4
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 1.3e-298 1029.6 831 63.7
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 3.2e-289 998.4 853 61.9
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.9e-286 989.2 833 61.3
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 1.6e-285 986.1 830 61.2
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 1.6e-285 986.1 830 61.2
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 1.5e-283 979.5 831 61.6
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 7.6e-283 977.2 831 61.5
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 1.7e-282 976.1 826 61.1
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 1.7e-282 976.1 830 61.3
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 4.0e-276 954.9 877 60.3
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 9.0e-276 953.7 712 70.2
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 3.2e-273 945.3 867 59.7
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 5.9e-267 924.5 633 73.8
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 2.9e-258 895.6 609 75.5
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 1.1e-249 867.1 829 58.4
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.8e-239 833.2 877 54.4
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 3.1e-236 822.4 613 67.5
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 1.9e-233 813.1 880 52.6
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.9e-233 813.1 860 53.0
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 3.6e-232 808.9 832 54.7
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.8e-231 806.6 871 52.4
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 6.6e-218 761.5 969 48.6
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 3.9e-194 682.6 900 45.9
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 1.5e-177 627.5 405 78.3
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.9e-169 600.5 375 80.3
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 4.5e-166 589.3 418 72.2
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 7.6e-166 588.6 571 59.5
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 4.0e-159 566.2 418 70.1
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 4.5e-158 562.8 424 69.6
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 1.5e-145 521.2 393 67.9
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 2.5e-145 520.4 363 72.5
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.1e-100 372.1 259 73.7
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.9e-92 344.7 221 80.5
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.5e-68 265.4 217 67.3
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 5.4e-63 246.9 218 61.5
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.7e-61 241.9 266 52.3
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.1e-47 196.1 121 81.8
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 3.1e-42 177.9 115 78.3
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 5.8e-41 173.7 117 73.5
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 1.1e-39 169.5 207 48.8
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 2.8e-35 154.8 225 43.6
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 2.0e-33 148.7 90 87.8
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 7.4e-28 130.2 140 50.7
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.4e-21 109.4 61 80.3
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 5.1e-21 107.5 61 78.7
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 5.1e-21 107.5 61 78.7
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.1e-20 106.3 86 59.3
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 2.6e-20 105.1 61 77.0
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 5.7e-20 104.0 129 47.3
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 7.4e-20 103.6 76 73.7
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 2.8e-19 101.7 58 77.6
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 8.2e-19 100.1 76 64.5
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 5.0e-16 90.9 92 51.1
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 2.0e-12 79.0 237 30.8
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 5.3e-10 70.9 72 52.8
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 8.5e-08 63.5 32 93.8
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 1.9e-07 62.4 76 43.4
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 6.1e-06 57.4 99 39.4


User provided reference genes

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