Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 5.2e-142 507.7 252 100.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.4e-102 375.9 252 73.0
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 6.0e-98 361.3 264 68.6
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.7e-92 343.2 252 66.7
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 6.7e-89 331.3 252 63.5
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 6.3e-79 298.1 252 56.3
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.1e-75 287.3 252 55.2
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 3.6e-74 282.3 252 57.1
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 4.1e-70 268.9 249 51.8
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.2e-68 263.1 256 49.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 3.8e-68 262.3 226 55.8
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 8.5e-68 261.2 253 51.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.1e-67 260.8 240 54.2
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 4.2e-67 258.8 256 49.6
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 7.2e-67 258.1 252 50.0
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.2e-66 257.3 256 52.0
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.2e-66 257.3 254 52.0
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.6e-66 256.9 256 48.4
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.6e-66 256.9 256 50.8
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.7e-66 256.1 254 51.6
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.1e-66 255.0 254 47.2
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.4e-65 253.8 256 48.8
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.4e-65 253.8 272 46.7
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.8e-65 253.4 234 53.0
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 3.0e-65 252.7 256 48.0
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.9e-65 252.3 257 51.8
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.8e-65 251.1 239 54.0
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 2.6e-64 249.6 254 49.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.6e-64 249.6 238 53.8
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 2.6e-64 249.6 238 51.3
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.3e-64 249.2 251 50.6
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 7.4e-64 248.1 256 48.8
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.2e-63 246.5 231 53.7
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.8e-63 246.1 255 46.7
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 4.8e-63 245.4 239 49.4
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 6.3e-63 245.0 232 51.7
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 6.3e-63 245.0 249 49.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.4e-62 243.8 229 52.8
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 2.4e-62 243.0 234 51.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 3.1e-62 242.7 223 52.9
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 3.1e-62 242.7 252 48.4
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 4.1e-62 242.3 240 50.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 5.3e-62 241.9 258 50.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 9.1e-62 241.1 235 54.9
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.5e-61 240.4 227 50.7
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.5e-61 240.4 232 53.0
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 5.9e-61 238.4 233 49.8
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 7.7e-61 238.0 247 47.4
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 7.7e-61 238.0 229 50.2
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 7.7e-61 238.0 254 46.5
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.2e-60 236.5 229 49.8
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 2.9e-60 236.1 230 50.0
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.8e-60 235.7 230 50.4
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.8e-60 235.7 235 50.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.0e-60 235.3 230 50.9
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.5e-60 235.0 235 51.9
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 8.5e-60 234.6 233 49.8
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 7.2e-59 231.5 230 50.4
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 7.2e-59 231.5 238 46.6
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.2e-58 230.7 233 48.9
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.2e-58 230.7 234 44.4
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.6e-58 230.3 233 48.9
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 6.1e-58 228.4 256 46.9
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.4e-57 227.3 248 46.8
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.9e-57 225.7 231 48.5
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.1e-56 224.2 254 46.5
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.1e-56 224.2 256 43.0
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.1e-56 224.2 238 47.1
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.5e-56 223.8 259 46.7
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 5.7e-56 221.9 219 51.1
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 7.4e-56 221.5 228 48.2
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 9.7e-56 221.1 237 46.8
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 3.7e-55 219.2 233 47.2
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 3.7e-55 219.2 191 55.5
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 3.7e-55 219.2 239 46.0
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.8e-55 218.8 226 48.2
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 4.8e-55 218.8 240 47.9
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.3e-55 218.4 233 46.4
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.3e-55 218.4 237 45.6
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 8.2e-55 218.0 256 46.1
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.8e-54 216.9 241 46.1
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.4e-54 216.5 238 46.6
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 4.1e-54 215.7 233 47.6
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 5.3e-54 215.3 234 47.4
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 7.0e-54 214.9 253 46.6
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 7.0e-54 214.9 233 47.2
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.2e-53 214.2 231 46.3
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.2e-53 214.2 226 47.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.6e-53 213.8 233 45.1
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.0e-53 213.4 242 43.8
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 2.0e-53 213.4 183 55.2
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 4.5e-53 212.2 253 45.5
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 5.9e-53 211.8 238 46.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 7.7e-53 211.5 242 43.8
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 7.7e-53 211.5 256 43.8
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.3e-52 210.7 232 46.1
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.7e-52 210.3 232 44.0
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.2e-52 209.9 238 47.1
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.9e-52 209.5 251 42.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.0e-52 208.8 232 44.8
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 8.5e-52 208.0 233 45.5
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.9e-51 206.8 231 45.0
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.9e-51 206.8 181 56.9
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 3.2e-51 206.1 232 44.4
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 3.2e-51 206.1 259 41.7
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 4.2e-51 205.7 233 45.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.2e-51 205.7 232 44.0
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 2.7e-50 203.0 233 42.9
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 6.1e-50 201.8 233 42.9
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.0e-49 201.1 231 43.7
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.0e-49 201.1 231 43.7
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.0e-49 201.1 184 51.6
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.0e-49 201.1 184 51.6
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.0e-49 201.1 237 46.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.4e-49 200.7 209 49.8
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.3e-49 199.9 238 45.0
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 5.2e-49 198.7 223 46.6
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 8.8e-49 198.0 241 43.6
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.2e-48 197.6 226 44.7
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.6e-48 196.4 240 43.3
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.4e-48 196.1 237 45.6
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.1e-46 189.5 207 48.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.1e-46 189.5 207 48.3
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.7e-45 186.4 238 42.0
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 8.5e-44 181.4 257 40.5
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.5e-43 180.6 227 41.4
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.5e-43 180.6 238 42.4
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.5e-43 179.9 204 44.6
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.1e-42 176.8 165 53.3
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 6.1e-42 175.3 209 45.9
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 3.0e-41 172.9 208 40.9
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.5e-40 170.6 193 48.7
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.7e-40 168.7 191 47.6
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.8e-34 149.8 215 40.0
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 6.1e-34 148.7 251 35.5
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.4e-33 147.5 164 47.6
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 8.3e-31 138.3 169 43.8
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.3e-28 131.0 97 56.7
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 8.6e-28 128.3 139 45.3
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 4.3e-27 125.9 147 49.0
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.0e-25 121.3 108 54.6
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 4.0e-25 119.4 78 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 1.3e-23 114.4 241 32.8
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.3e-23 114.4 93 57.0
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 2.7e-21 106.7 85 58.8
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.3e-20 104.4 86 58.1
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.5e-19 100.9 134 41.0
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.5e-19 100.1 248 28.2
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.6e-18 97.4 112 44.6
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 7.1e-14 82.0 149 34.2
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.9e-11 73.9 55 63.6


User provided reference genes

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