Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.4e-221 772.7 414 100.0
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 6.9e-176 620.9 422 80.6
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.7e-161 573.2 431 76.6
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 5.9e-151 538.1 418 71.8
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.3e-150 537.0 418 71.3
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 9.4e-149 530.8 415 70.8
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.3e-147 526.2 421 69.8
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 9.1e-144 514.2 429 69.2
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.2e-142 509.6 431 68.0
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 7.2e-141 504.6 414 67.4
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 2.1e-140 503.1 422 67.1
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 4.0e-139 498.8 422 67.5
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 4.0e-139 498.8 423 67.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 5.2e-139 498.4 420 67.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.2e-138 497.3 444 64.9
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.8e-138 494.2 414 68.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.9e-137 491.9 422 66.6
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 6.3e-137 491.5 423 67.8
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.1e-136 490.7 419 67.5
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.8e-136 490.0 424 67.9
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.4e-136 489.6 419 67.8
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 7.0e-136 488.0 416 66.6
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 9.2e-136 487.6 423 66.9
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.0e-135 486.5 423 67.1
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.5e-135 485.7 420 66.7
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 4.5e-135 485.3 411 66.4
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.9e-135 485.0 417 67.9
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 7.7e-135 484.6 427 67.2
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.9e-134 482.6 409 67.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.8e-134 482.3 420 66.0
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.0e-134 481.9 420 65.7
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.5e-133 480.3 424 65.1
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 9.5e-133 477.6 423 66.7
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.6e-132 476.9 418 67.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 8.0e-132 474.6 420 65.2
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.3e-131 473.0 420 65.0
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.0e-131 472.2 421 65.1
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 6.8e-131 471.5 439 63.6
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.4e-130 469.2 411 66.9
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 7.5e-130 468.0 447 61.3
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.2e-129 466.5 416 64.4
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.0e-127 459.9 416 63.2
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 5.9e-127 458.4 421 64.4
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 3.0e-126 456.1 420 63.6
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.9e-125 453.4 466 58.4
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 4.3e-125 452.2 427 61.8
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 5.6e-125 451.8 398 66.6
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 9.5e-125 451.1 419 64.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.6e-124 449.1 493 56.8
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-123 447.6 417 62.8
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.8e-123 446.8 423 62.2
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 6.8e-123 444.9 419 63.7
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.4e-122 442.6 426 63.8
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.5e-122 441.4 414 62.3
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-121 440.7 410 64.1
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.7e-121 440.3 420 61.9
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.7e-121 440.3 416 63.7
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 2.2e-121 439.9 399 64.7
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.1e-120 437.6 429 62.7
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.9e-120 436.8 414 63.0
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 2.4e-120 436.4 419 61.6
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.2e-119 434.1 416 62.7
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 4.6e-119 432.2 371 68.2
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-118 430.6 414 61.1
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.9e-118 429.1 412 62.9
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 5.0e-118 428.7 402 63.4
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.1e-117 427.6 413 63.2
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.5e-117 426.4 408 63.5
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 3.3e-117 426.0 416 62.0
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 5.6e-117 425.2 369 67.2
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 9.5e-117 424.5 421 59.9
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.6e-116 423.7 412 61.4
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.6e-116 423.7 416 62.3
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.1e-116 423.3 421 59.6
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 2.8e-116 422.9 414 61.6
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 6.2e-116 421.8 414 59.9
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.0e-114 416.8 439 57.9
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.4e-112 409.8 421 58.9
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.2e-112 409.5 421 58.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 7.1e-112 408.3 417 60.4
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 9.2e-112 407.9 419 58.7
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.1e-111 406.8 413 60.3
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.7e-110 403.7 401 62.6
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 2.3e-110 403.3 423 59.1
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 3.9e-110 402.5 423 58.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 3.3e-109 399.4 422 57.8
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 4.3e-109 399.1 275 76.7
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.6e-109 398.7 405 63.2
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 7.3e-109 398.3 407 59.0
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 6.2e-108 395.2 416 59.4
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.4e-107 394.0 420 57.4
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.5e-106 390.6 423 59.3
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.3e-105 387.5 453 54.3
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 8.4e-105 384.8 390 59.0
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 8.4e-105 384.8 390 59.0
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 8.4e-105 384.8 353 62.9
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.9e-104 383.6 389 59.6
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 3.2e-104 382.9 403 58.1
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 7.1e-104 381.7 369 59.9
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 7.8e-103 378.3 401 57.1
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.0e-102 377.9 411 56.2
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.8e-100 369.8 294 69.7
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.4e-99 367.5 313 66.1
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 6.0e-95 352.1 432 54.2
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.7e-94 350.5 437 52.9
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.3e-92 344.4 416 55.3
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 1.6e-92 344.0 415 53.3
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 4.5e-90 335.9 265 71.7
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 9.3e-88 328.2 382 53.1
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.3e-86 324.3 418 48.8
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 4.5e-82 309.3 414 50.0
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.1e-78 295.8 297 60.6
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 6.9e-75 285.4 267 62.2
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 4.9e-73 279.3 323 54.5
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.5e-69 267.7 273 59.3
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 6.3e-68 262.3 299 54.5
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.8e-67 260.8 337 49.9
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 9.0e-67 258.5 273 60.4
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.5e-66 257.7 271 59.0
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.6e-66 256.9 263 60.1
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.2e-65 253.8 417 45.1
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.4e-64 251.1 271 57.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.6e-63 247.7 261 59.4
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-62 245.0 188 70.7
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.3e-61 240.0 272 55.5
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.8e-60 236.1 330 48.8
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 3.1e-59 233.4 404 42.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 3.8e-57 226.5 253 54.2
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.7e-52 209.9 446 38.3
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 4.1e-51 206.5 254 54.3
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 5.0e-49 199.5 442 36.9
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 5.5e-48 196.1 256 52.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-46 191.8 136 72.1
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 6.7e-46 189.1 135 71.9
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-44 184.9 184 59.2
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 2.2e-44 184.1 182 59.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.0e-41 175.3 124 76.6
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 3.8e-41 173.3 399 38.6
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.4e-35 154.8 202 51.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 3.1e-35 153.7 464 32.8
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.0e-33 148.7 141 58.9
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-33 148.3 135 57.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 8.0e-31 139.0 146 56.2
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.1e-19 100.5 130 51.5
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 6.1e-15 86.3 185 40.5
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 6.8e-14 82.8 223 39.0
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 3.3e-08 63.9 108 41.7
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 7.3e-08 62.8 37 78.4
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 8.0e-07 59.3 35 77.1
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 2.3e-06 57.8 33 78.8


User provided reference genes

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