Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 0.0e+00 1133.6 553 100.0
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 3.4e-271 937.9 563 80.6
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 1.2e-239 833.2 560 71.6
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 3.5e-239 831.6 567 69.8
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.3e-238 829.7 563 69.8
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 3.8e-238 828.2 553 71.2
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 8.5e-238 827.0 504 79.8
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 6.7e-235 817.4 568 68.3
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 2.6e-231 805.4 569 67.1
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 1.0e-230 803.5 566 67.8
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.5e-229 799.7 562 67.6
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 9.4e-229 797.0 571 66.4
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 8.0e-228 793.9 562 67.1
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 1.4e-227 793.1 570 66.1
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 1.8e-227 792.7 568 66.4
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.8e-227 792.7 568 67.3
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 4.4e-226 788.1 570 66.3
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 9.7e-226 786.9 562 66.5
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 2.2e-225 785.8 567 66.3
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.8e-225 785.4 567 65.8
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 3.7e-225 785.0 567 66.0
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 4.8e-225 784.6 569 66.4
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 5.3e-224 781.2 566 65.7
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.0e-223 779.2 566 65.7
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 1.0e-222 776.9 586 64.5
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.3e-222 776.5 566 65.7
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 1.7e-222 776.2 570 65.1
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 3.8e-222 775.0 566 66.3
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 1.1e-221 773.5 519 71.5
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 1.9e-221 772.7 564 66.1
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 4.2e-221 771.5 572 65.2
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 5.5e-221 771.2 561 66.7
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 9.4e-221 770.4 570 64.4
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.6e-220 769.6 566 64.7
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 4.7e-220 768.1 563 65.9
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 8.0e-220 767.3 569 65.9
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 3.4e-218 761.9 557 66.4
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 7.5e-218 760.8 570 64.2
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 6.3e-217 757.7 618 60.4
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.3e-214 750.0 565 61.8
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.7e-214 749.6 562 61.7
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 1.1e-213 746.9 568 63.4
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 1.9e-213 746.1 541 65.8
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 4.2e-213 745.0 604 60.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.8e-211 739.6 527 68.3
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 2.6e-210 735.7 562 61.0
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 7.5e-210 734.2 562 61.2
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 1.3e-209 733.4 568 62.5
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 1.3e-209 733.4 556 61.3
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.7e-209 733.0 556 61.5
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 4.9e-209 731.5 562 61.0
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 7.0e-208 727.6 518 68.5
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.2e-207 726.9 556 61.5
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 4.5e-207 724.9 568 61.4
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.0e-206 723.8 563 63.6
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 5.0e-206 721.5 555 61.8
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 9.5e-205 717.2 554 62.3
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 1.8e-203 713.0 563 62.0
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.1e-203 712.2 517 68.1
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 8.9e-203 710.7 522 66.3
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 5.8e-202 708.0 560 61.4
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 4.1e-200 701.8 560 61.4
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 2.0e-199 699.5 564 61.0
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 2.7e-199 699.1 564 60.8
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 4.6e-199 698.4 571 60.2
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 1.3e-198 696.8 517 64.6
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 5.0e-198 694.9 565 60.4
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 1.1e-197 693.7 520 62.9
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 9.5e-197 690.6 527 62.0
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.1e-195 687.2 553 61.8
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 2.3e-195 686.0 557 60.9
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 2.4e-192 676.0 577 60.5
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 1.7e-185 653.3 481 69.2
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 4.6e-183 645.2 566 57.1
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.1e-181 640.6 595 55.8
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 1.2e-180 637.1 533 60.0
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 2.0e-178 629.8 462 66.2
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.6e-175 620.2 462 66.0
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.1e-175 619.8 477 63.7
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 2.4e-171 606.3 562 54.8
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 9.9e-170 600.9 460 63.0
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 1.7e-169 600.1 566 53.0
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 8.4e-169 597.8 584 51.0
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 6.0e-167 591.7 583 53.0
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 1.1e-160 570.9 725 45.8
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 5.4e-160 568.5 526 54.9
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 9.3e-160 567.8 495 58.0
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 3.9e-158 562.4 526 54.0
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.0e-146 523.5 526 50.2
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 8.2e-140 501.5 396 61.9
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 1.2e-127 461.1 303 69.0
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 6.1e-111 405.6 301 61.1
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 6.8e-110 402.1 601 38.1
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 1.3e-105 387.9 317 60.3
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 5.5e-104 382.5 340 55.6
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 5.2e-102 375.9 597 35.2
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 7.5e-101 372.1 242 68.6
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 2.7e-98 363.6 311 55.9
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 3.0e-94 350.1 319 55.2
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 5.2e-94 349.4 707 33.0
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 7.5e-85 318.9 254 62.2
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 3.3e-80 303.5 244 57.8
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 1.8e-78 297.7 207 66.2
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 1.2e-74 285.0 270 52.6
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 7.8e-74 282.3 267 53.6
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 9.5e-72 275.4 252 55.6
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 3.1e-62 243.8 193 55.4
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 7.6e-61 239.2 156 70.5
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.5e-56 224.9 307 40.7
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 2.5e-56 224.2 202 55.4
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.7e-52 211.5 140 62.9
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 4.2e-51 206.8 140 62.9
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 6.6e-49 199.5 185 53.0
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 7.4e-48 196.1 170 60.6
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 2.3e-41 174.5 168 53.6
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 1.9e-35 154.8 93 78.5
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 3.7e-31 140.6 86 72.1
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 1.4e-27 128.6 148 48.0
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.6e-23 115.2 146 45.2
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 6.7e-17 93.2 63 66.7
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 3.1e-14 84.3 62 69.4
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 1.0e-09 69.3 39 76.9
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 7.4e-08 63.2 57 45.6
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 7.0e-06 56.6 119 33.6


User provided reference genes

Program Settings