Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2605 Erigeron canadensis HOM05D003807 ORTHO05D002847 1.6e-101 372.9 197 100.0
Lsat_1_v5_gn_3_116801 Lactuca sativa HOM05D003807 ORTHO05D002847 1.0e-31 141.0 186 54.3
Lsat_1_v5_gn_5_67041 Lactuca sativa HOM05D044999 ORTHO05D002847 8.2e-26 121.3 180 46.1
CsaV3_4G007280 Cucumis sativus L. HOM05D001711 ORTHO05D002847 7.2e-14 81.6 191 37.2
ClCG11G016820 Citrullus lanatus HOM05D003807 ORTHO05D002847 2.3e-12 76.6 210 34.8
Oeu054525.1 Olea europaea HOM05D003807 ORTHO05D002847 3.0e-12 76.3 170 35.3
Oeu022924.1 Olea europaea HOM05D003807 ORTHO05D002847 3.9e-12 75.9 172 35.5
MSTRG.12273 Avicennia marina HOM05D003807 ORTHO05D002847 8.8e-12 74.7 191 34.6
LjContig00081g0007494 Lotus japonicus HOM05D001711 ORTHO05D002847 8.8e-12 74.7 127 44.1
Cfa022497 Carpinus fangiana HOM05D001711 ORTHO05D002847 2.0e-11 73.6 102 49.0
DCAR_013031 Daucus carota HOM05D001711 ORTHO05D002847 2.0e-11 73.6 160 38.8
Duzib211G0113 Durio zibethinus HOM05D001711 ORTHO05D002847 2.6e-11 73.2 98 49.0
TAR627G0259 Trochodendron aralioides HOM05D003807 ORTHO05D002847 2.6e-11 73.2 123 46.3
Peaxi162Scf00047g00243 Petunia axillaris HOM05D003807 ORTHO05D002847 4.4e-11 72.4 177 33.9
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 4.4e-11 72.4 172 37.2
TAR626G1107 Trochodendron aralioides HOM05D001711 ORTHO05D002847 5.7e-11 72.0 109 47.7
arahy.Tifrunner.gnm1.ann1.W19YV6 Arachis hypogaea HOM05D001711 ORTHO05D002847 7.4e-11 71.6 91 50.5
Nn7g38292 Nelumbo nucifera HOM05D001711 ORTHO05D002847 7.4e-11 71.6 108 51.9
Migut.M00092 Erythranthe guttata HOM05D001711 ORTHO05D002847 9.7e-11 71.2 169 37.9
Glyma.13G005100 Glycine max HOM05D001711 ORTHO05D002847 1.3e-10 70.9 118 43.2
Medtr3g081500 Medicago truncatula HOM05D001711 ORTHO05D002847 1.3e-10 70.9 125 43.2
Nitab4.5_0002570g0040 Nicotiana tabacum HOM05D001711 ORTHO05D002847 1.3e-10 70.9 181 33.7
ClCG07G010990 Citrullus lanatus HOM05D001711 ORTHO05D002847 1.7e-10 70.5 186 34.4
FAN25G3700 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.7e-10 70.5 105 39.0
MSTRG.6598 Avicennia marina HOM05D003807 ORTHO05D002847 2.2e-10 70.1 155 33.5
FAN21G0474 Fragaria x ananassa HOM05D003807 ORTHO05D002847 2.2e-10 70.1 99 40.4
Nitab4.5_0000170g0400 Nicotiana tabacum HOM05D003807 ORTHO05D002847 2.2e-10 70.1 177 39.0
Nitab4.5_0002232g0070 Nicotiana tabacum HOM05D003807 ORTHO05D002847 2.8e-10 69.7 207 36.2
Peaxi162Scf00393g00062 Petunia axillaris HOM05D001711 ORTHO05D002847 3.7e-10 69.3 93 45.2
Aqoxy4G00416 Aquilegia oxysepala HOM05D003807 ORTHO05D002847 6.3e-10 68.6 99 44.4
Duzib133G1073 Durio zibethinus HOM05D001711 ORTHO05D002847 6.3e-10 68.6 95 45.3
Prupe.3G185800 Prunus persica HOM05D003807 ORTHO05D002847 6.3e-10 68.6 146 37.7
Sed0015396 Sechium edule HOM05D001711 ORTHO05D002847 6.3e-10 68.6 165 37.0
Aa31LG8G8720 Aethionema arabicum HOM05D003807 ORTHO05D002847 8.2e-10 68.2 133 38.3
MELO3C016231.2 Cucumis melo HOM05D001711 ORTHO05D002847 1.1e-09 67.8 136 40.4
Manes.08G068801 Manihot esculenta HOM05D001711 ORTHO05D002847 1.1e-09 67.8 133 39.1
Manes.09G079619 Manihot esculenta HOM05D001711 ORTHO05D002847 1.1e-09 67.8 128 39.8
Potri.006G006300 Populus trichocarpa HOM05D001711 ORTHO05D002847 1.1e-09 67.8 169 34.3
Ciclev10012635m.g Citrus clementina HOM05D001711 ORTHO05D002847 1.4e-09 67.4 188 31.9
Rhsim12G0015000 Rhododendron simsii HOM05D001711 ORTHO05D002847 1.4e-09 67.4 102 47.1
Cpa.g.sc8.284 Carica papaya HOM05D001711 ORTHO05D002847 1.8e-09 67.0 136 43.4
CiPaw.03G111200 Carya illinoinensis HOM05D001711 ORTHO05D002847 1.8e-09 67.0 200 31.5
FvH4_3g12720 Fragaria vesca HOM05D003807 ORTHO05D002847 1.8e-09 67.0 103 38.8
FAN11G1675 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.8e-09 67.0 103 38.8
Ca_16315_v3 Cicer arietinum L. HOM05D001711 ORTHO05D002847 2.4e-09 66.6 120 41.7
Nitab4.5_0000073g0510 Nicotiana tabacum HOM05D001711 ORTHO05D002847 2.4e-09 66.6 174 38.5
Phvul.006G002700 Phaseolus vulgaris HOM05D001711 ORTHO05D002847 2.4e-09 66.6 103 46.6
VMungo0540G2275 Vigna mungo HOM05D001711 ORTHO05D002847 2.4e-09 66.6 96 47.9
Lalb_Chr10g0093681 Lupinus albus HOM05D001711 ORTHO05D002847 3.1e-09 66.2 172 39.5
Sopen07g022830 Solanum pennellii HOM05D003807 ORTHO05D002847 4.1e-09 65.9 185 33.5
Potri.016G017900 Populus trichocarpa HOM05D001711 ORTHO05D002847 5.3e-09 65.5 64 59.4
Sc07g0001950 Simmondsia chinensis HOM05D001711 ORTHO05D002847 5.3e-09 65.5 99 44.4
TPR.G8276 Trifolium pratense HOM05D001711 ORTHO05D002847 5.3e-09 65.5 208 30.8
AT3G22160 Arabidopsis thaliana HOM05D003807 ORTHO05D002847 7.0e-09 65.1 106 42.5
Haze_13646 Corylus avellana HOM05D001711 ORTHO05D002847 7.0e-09 65.1 63 61.9
Thhalv10021568m.g Eutrema salsugineum HOM05D003807 ORTHO05D002847 7.0e-09 65.1 122 41.8
FAN16G0324 Fragaria x ananassa HOM05D003807 ORTHO05D002847 7.0e-09 65.1 99 38.4
Thecc.01G173400 Theobroma cacao HOM05D001711 ORTHO05D002847 7.0e-09 65.1 174 33.3
Atru.chr8.1002 Acer truncatum HOM05D003807 ORTHO05D002847 9.1e-09 64.7 107 41.1
Glyma.20G064500 Glycine max HOM05D001711 ORTHO05D002847 9.1e-09 64.7 153 37.9
PGR031G0807 Punica granatum HOM05D003807 ORTHO05D002847 9.1e-09 64.7 113 41.6
RcHm_v2.0_Chr5g0020711 Rosa chinensis HOM05D003807 ORTHO05D002847 9.1e-09 64.7 102 40.2
PGSC0003DMG400011745 Solanum tuberosum HOM05D003807 ORTHO05D002847 1.2e-08 64.3 107 44.9
Sed0006784 Sechium edule HOM05D003807 ORTHO05D002847 1.6e-08 63.9 115 41.7
AL3G36350 Arabidopsis lyrata HOM05D003807 ORTHO05D002847 2.0e-08 63.5 120 40.0
Oeu003076.1 Olea europaea HOM05D001711 ORTHO05D002847 2.0e-08 63.5 96 39.6
Psat5g106560 Pisum sativum HOM05D001711 ORTHO05D002847 2.0e-08 63.5 149 36.9
SalBow3G3892 Salvia bowleyana HOM05D003807 ORTHO05D002847 2.0e-08 63.5 62 64.5
Actinidia22425 Actinidia chinensis HOM05D003807 ORTHO05D002847 2.6e-08 63.2 160 33.8
Gohir.D11G162700 Gossypium hirsutum HOM05D001711 ORTHO05D002847 2.6e-08 63.2 113 42.5
Gorai.007G173300 Gossypium raimondii HOM05D001711 ORTHO05D002847 2.6e-08 63.2 113 42.5
BcaC05g28098 Brassica carinata HOM05D003807 ORTHO05D002847 3.5e-08 62.8 105 41.0
C05p41250 Brassica napus HOM05D003807 ORTHO05D002847 3.5e-08 62.8 105 41.0
BolC5t32867H Brassica oleracea HOM05D003807 ORTHO05D002847 3.5e-08 62.8 105 41.0
CiPaw.04G072500 Carya illinoinensis HOM05D001711 ORTHO05D002847 3.5e-08 62.8 189 34.9
AUR62003537 Chenopodium quinoa HOM05D001711 ORTHO05D002847 3.5e-08 62.8 111 43.2
Gohir.A07G083901 Gossypium hirsutum HOM05D003807 ORTHO05D002847 3.5e-08 62.8 92 44.6
Solyc07g043250.1 Solanum lycopersicum HOM05D003807 ORTHO05D002847 3.5e-08 62.8 129 40.3
Lj6g0002202 Lotus japonicus HOM05D001711 ORTHO05D002847 4.5e-08 62.4 110 46.4
Aa31LG9G2270 Aethionema arabicum HOM05D003807 ORTHO05D002847 5.9e-08 62.0 116 44.0
CANSAT64G0062 Cannabis sativa HOM05D001711 ORTHO05D002847 5.9e-08 62.0 51 64.7
CAN.G182.24 Capsicum annuum HOM05D001711 ORTHO05D002847 5.9e-08 62.0 72 51.4
AUR62017851 Chenopodium quinoa HOM05D001711 ORTHO05D002847 5.9e-08 62.0 111 44.1
Duzib132G1175 Durio zibethinus HOM05D003807 ORTHO05D002847 5.9e-08 62.0 163 31.9
Glyma.14G002800 Glycine max HOM05D001711 ORTHO05D002847 5.9e-08 62.0 89 46.1
Gorai.001G093400 Gossypium raimondii HOM05D003807 ORTHO05D002847 5.9e-08 62.0 95 45.3
RcHm_v2.0_Chr2g0153531 Rosa chinensis HOM05D003807 ORTHO05D002847 5.9e-08 62.0 138 38.4
TWI32G0059 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 5.9e-08 62.0 106 41.5
BcaC09g49150 Brassica carinata HOM05D003807 ORTHO05D002847 7.7e-08 61.6 58 63.8
A01p33000 Brassica napus HOM05D003807 ORTHO05D002847 7.7e-08 61.6 58 63.8
C01p42110 Brassica napus HOM05D003807 ORTHO05D002847 7.7e-08 61.6 58 63.8
BolC1t04173H Brassica oleracea HOM05D003807 ORTHO05D002847 7.7e-08 61.6 58 63.8
BraA01t03420Z Brassica rapa HOM05D003807 ORTHO05D002847 7.7e-08 61.6 58 63.8
Gohir.D07G087400 Gossypium hirsutum HOM05D003807 ORTHO05D002847 7.7e-08 61.6 95 45.3
Sp3g19970 Schrenkiella parvula HOM05D003807 ORTHO05D002847 7.7e-08 61.6 116 37.9
Dinv08378 Davidia involucrata HOM05D001711 ORTHO05D002847 1.0e-07 61.2 62 59.7
FvH4_6g39500 Fragaria vesca HOM05D003807 ORTHO05D002847 1.0e-07 61.2 41 78.0
FAN02G4313 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.0e-07 61.2 41 78.0
FAN05G3549 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.0e-07 61.2 41 78.0
FAN09G4092 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.0e-07 61.2 41 78.0
FAN14G1837 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.0e-07 61.2 41 78.0
BraA05t21543Z Brassica rapa HOM05D003807 ORTHO05D002847 1.3e-07 60.8 120 38.3
Sabra16G0020100 Salix brachista HOM05D001711 ORTHO05D002847 1.3e-07 60.8 104 43.3
VMungo0647G1411 Vigna mungo HOM05D001711 ORTHO05D002847 1.3e-07 60.8 90 45.6
Carub.0003s2233 Capsella rubella HOM05D003807 ORTHO05D002847 1.7e-07 60.5 58 62.1
Gohir.A11G155800 Gossypium hirsutum HOM05D001711 ORTHO05D002847 1.7e-07 60.5 110 41.8
Phvul.008G290700 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 1.7e-07 60.5 128 41.4
TAR624G1275 Trochodendron aralioides HOM05D001711 ORTHO05D002847 1.7e-07 60.5 174 32.8
Ah.02g120820 Amaranthus hybridus HOM05D001711 ORTHO05D002847 2.2e-07 60.1 37 78.4
BcaB04g20540 Brassica carinata HOM05D003807 ORTHO05D002847 2.2e-07 60.1 58 62.1
DCAR_021260 Daucus carota HOM05D003807 ORTHO05D002847 2.2e-07 60.1 199 30.2
Lalb_Chr04g0247001 Lupinus albus HOM05D003807 ORTHO05D002847 3.8e-07 59.3 47 68.1
TWI60G0522 Tripterygium wilfordii HOM05D001711 ORTHO05D002847 3.8e-07 59.3 79 51.9
CARHR098040 Cardamine hirsuta HOM05D003807 ORTHO05D002847 5.0e-07 58.9 58 60.3
AT4G15120 Arabidopsis thaliana HOM05D003807 ORTHO05D002847 6.5e-07 58.5 108 48.1
Gohir.A12G048200 Gossypium hirsutum HOM05D003807 ORTHO05D002847 6.5e-07 58.5 96 34.4
Gohir.D12G047000 Gossypium hirsutum HOM05D003807 ORTHO05D002847 6.5e-07 58.5 96 34.4
Gorai.008G049600 Gossypium raimondii HOM05D003807 ORTHO05D002847 6.5e-07 58.5 96 34.4
BcaB06g26318 Brassica carinata HOM05D003807 ORTHO05D002847 8.5e-07 58.2 105 42.9
Gohir.D12G046900 Gossypium hirsutum HOM05D003807 ORTHO05D002847 8.5e-07 58.2 98 36.7
Prupe.4G116000 Prunus persica HOM05D003807 ORTHO05D002847 8.5e-07 58.2 103 36.9
Sed0012785 Sechium edule HOM05D001711 ORTHO05D002847 8.5e-07 58.2 76 50.0
SGA_v2.0_scaffold73G24425 Striga asiatica HOM05D003807 ORTHO05D002847 8.5e-07 58.2 84 42.9
CsaV3_4G032360 Cucumis sativus L. HOM05D003807 ORTHO05D002847 1.1e-06 57.8 105 41.0
COL.COLO4_17627 Corchorus olitorius HOM05D003807 ORTHO05D002847 1.5e-06 57.4 94 42.6
MSTRG.14877 Avicennia marina HOM05D003807 ORTHO05D002847 1.9e-06 57.0 107 39.3
Gorai.008G049400 Gossypium raimondii HOM05D003807 ORTHO05D002847 1.9e-06 57.0 98 36.7
Os02g0173200 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002847 1.9e-06 57.0 40 72.5
QL11p039996 Quercus lobata HOM05D001711 ORTHO05D002847 1.9e-06 57.0 41 73.2
QL11p040755 Quercus lobata HOM05D001711 ORTHO05D002847 1.9e-06 57.0 41 73.2
BcaNung00304 Brassica carinata HOM05D003807 ORTHO05D002847 2.5e-06 56.6 67 53.7
Ciclev10025465m.g Citrus clementina HOM05D001711 ORTHO05D002211 2.5e-06 56.6 96 41.7
MELO3C026380.2 Cucumis melo HOM05D003807 ORTHO05D002847 2.5e-06 56.6 72 48.6
Gohir.A12G048100 Gossypium hirsutum HOM05D003807 ORTHO05D002847 2.5e-06 56.6 96 36.5
TPR.G31858 Trifolium pratense HOM05D003807 ORTHO05D002847 2.5e-06 56.6 119 37.8
AL7G40590 Arabidopsis lyrata HOM05D003807 ORTHO05D002847 3.2e-06 56.2 52 63.5
Glyma.15G158200 Glycine max HOM05D003807 ORTHO05D002847 3.2e-06 56.2 157 33.1
THA.LOC104822519 Tarenaya hassleriana HOM05D003807 ORTHO05D002847 3.2e-06 56.2 111 42.3
CARHR221860 Cardamine hirsuta HOM05D003807 ORTHO05D002847 4.2e-06 55.8 162 35.8
Zm00001eb233250 Zea mays HOM05D001711 ORTHO05D002847 4.2e-06 55.8 40 72.5
Os06g0666400 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002847 5.5e-06 55.5 31 83.9
Sp7g13350 Schrenkiella parvula HOM05D003807 ORTHO05D002847 7.2e-06 55.1 77 50.6
THA.LOC104803007 Tarenaya hassleriana HOM05D003807 ORTHO05D002847 7.2e-06 55.1 45 66.7
VMungo1309G0233 Vigna mungo HOM05D003807 ORTHO05D002847 7.2e-06 55.1 162 32.7
Eucgr.K01342 Eucalyptus grandis HOM05D001711 ORTHO05D002847 9.4e-06 54.7 47 59.6
Phvul.009G241900 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 9.4e-06 54.7 172 30.8
Thecc.02G005300 Theobroma cacao HOM05D003807 ORTHO05D002847 9.4e-06 54.7 101 38.6


User provided reference genes

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